Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4241 107 1e-18 seq4196 100 2e-16 seq4164 84.2 2e-11 >seq4241 Length=1709304 Score = 107 bits (118), Expect = 1e-18 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGC 44177 |||| || || | |||||| ||| |||||||| ||||||||||||| ||||| | Sbjct 639151 AGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTT--C 639208 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 |||| |||||||| || || |||||||| |||||||| ||||| | || | || | Sbjct 639209 TGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCT 639268 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 | || ||| | | || |||| | | || ||||||| || | | || || || | Sbjct 639269 CTTTGTCC-TGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGG 639327 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| ||||| ||||| |||||||| ||||| Sbjct 639328 GTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 107 bits (118), Expect = 1e-18 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 || || ||||||||||| || | ||||| || | || |||| |||||| || |||| Sbjct 640195 TCTTTCTGGATGTTGTAGTCAGAAAGAGTTCT-GC-CATCTTCCAACTGCTTTCCAGCAA 640252 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 |||||| ||| |||||||||| || | |||||| || ||| || || || | Sbjct 640253 AGATCAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCCTGAATTTTAGCTTTTACAT 640312 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || |||| ||||| | | ||||||||| | || || || ||||| || || || |||| Sbjct 640313 TTTCTATTGTGTCAGAAGCTTCCACCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCA 640372 Query 44325 CGAAGATTTGCATGATG 44341 | ||||||||||||||| Sbjct 640373 CAAAGATTTGCATGATG 640389 >seq4196 Length=1840941 Score = 100 bits (110), Expect = 2e-16 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| |||||||| | ||| ||| | || |||||||| || || || ||| Sbjct 1068773 CCTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAG 1068714 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | || |||||||| | || | || ||||| || ||||| || | || Sbjct 1068713 ATGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTT 1068654 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | ||||| |||| || || ||||| | || || || || ||||||||||||||||| Sbjct 1068653 TCAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACA 1068594 Query 44327 AAGATTTGCATGATG 44341 |||||||||||| || Sbjct 1068593 AAGATTTGCATGGTG 1068579 >seq4164 Length=697328 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | | ||| | |||| || || ||| ||||| || || |||||||| Sbjct 358965 CATTCCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATC 359024 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || || || | || || |||||||| || || || |||||||||||||| |||| Sbjct 359025 TGACAAGGTG-CGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTG 359083 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | |||||||| ||| ||||| ||| | | ||| | || || || | | Sbjct 359084 GTGGGATGCCTTCCTTATCCTGGATCTT-TGCCTTTACATTCTCGATAGTATCAGAAGCC 359142 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || || | || || || || || || | ||||||||||| || |||||| || Sbjct 359143 TCAACTTCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCATGGTG 359199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359970020605965