Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4241 178 3e-39 seq4196 158 3e-33 seq4164 150 4e-31 >seq4241 Length=1709304 Score = 178 bits (196), Expect = 3e-39 Identities = 160/201 (80%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| || |||||||| ||||| || ||||||||| || ||| Sbjct 640382 CAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCTGAC 640323 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||||||||||||||| || || || || |||||| Sbjct 640322 ACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAGCAA 640263 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||| | |||||||| || |||||| | || || ||| || Sbjct 640262 CGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAACATC 640203 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || |||||||||||||| ||| Sbjct 640202 CAGAAAGAATCAACACTCCAT 640182 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || |||||||||||||| |||||||| || || || || || Sbjct 639365 CAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTCGGAT 639306 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| || |||||||||||||| || || || || || || || Sbjct 639305 ACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCAACAG 639246 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||||| ||||| || || |||||| ||||||| ||| | Sbjct 639245 CGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAACATT 639186 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| ||||| || | ||||| |||| Sbjct 639185 CAAAAGGAATCCACACTTCACTTAGTTTTACGACT 639151 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||||||||| ||||| ||||| ||||| || ||| |||||| Sbjct 640154 CAGATCTTTGTGAAGACTCTCACAGGCAAAACCATCACTCTCGAAGTCGAAGCTTCAGAC 640095 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| ||||||||||| || || || || ||||| Sbjct 640094 ACTATAGAAAATGTAAAAGCTAAGATTCAAGACAAAGAAGGCATTCCACCCGATCAGCAG 640035 Query 178044 CG 178045 || Sbjct 640034 CG 640033 >seq4196 Length=1840941 Score = 158 bits (174), Expect = 3e-33 Identities = 147/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| || ||||| |||||||||||||| || ||| || Sbjct 1068586 CAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCCTCCGAT 1068645 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| |||||||| || || || ||||| || ||||| |||||| Sbjct 1068646 ACCATTGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATTCCACCGGATCAGCAA 1068705 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || |||||||| || |||||| | ||||| | ||||| || || Sbjct 1068706 CGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGATTACAATATC 1068765 Query 178104 CAAAAAG 178110 || |||| Sbjct 1068766 CAGAAAG 1068772 >seq4164 Length=697328 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | |||||||| || ||||| | || || ||| || ||| Sbjct 358102 CAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCGGAC 358043 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| || |||||||||||||||||||| ||||| || ||||| Sbjct 358042 ACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAGCAG 357983 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| ||||| || || | ||| | |||||||||| | Sbjct 357982 AGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAATATT 357923 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| ||||| || ||||| Sbjct 357922 CAAAAGGAATCTACACTTCACCTTGT 357897 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || | ||| ||||| || ||||||||||| || || || ||| |||||| Sbjct 358330 CAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCAGAC 358271 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || ||||| ||||| ||||| || || || || || || Sbjct 358270 ACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAACAG 358211 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||||||||| || ||||| || | || | ||||||| || | Sbjct 358210 AGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACAATATA 358151 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 |||||||||||||| ||||| | ||| Sbjct 358150 CAAAAAGAATCAACTTTGCATTTGGTT 358124 Score = 127 bits (140), Expect = 5e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || || ||||| || || ||||| || || || || Sbjct 359192 CAGATTTTCGTGAAGACGTTAACCGGGAAAACCATAACTCTCGAAGTTGAGGCTTCTGAT 359133 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||| ||||| || ||||| ||||| || |||||||| Sbjct 359132 ACTATCGAGAATGTAAAGGCAAAGATCCAGGATAAGGAAGGCATCCCACCAGACCAGCAG 359073 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || ||||| ||||| ||||| ||||||||| | || |||| | ||||| || | Sbjct 359072 CGTTTGATTTTCGCTGGAAAGCAGCTTGAAGATGGACGCAC-CTTGTCAGATTACAATAT 359014 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || ||||| || || ||| | ||| | ||| Sbjct 359013 TCAGAAGGAATCCACTCTCCATTTGGTTCTCAGA 358980 Score = 111 bits (122), Expect = 4e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || ||||| || || || |||||| || ||||||||||| ||||||||||||||||| Sbjct 358504 TCGGACACAATTGAAAATGTCAAAGCTAAAATTCAGGACAAGGAAGGAATCCCTCCGGAT 358445 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| | | || || ||||||||||| ||||| || || | || || |||| || Sbjct 358444 CAGCAGAGGTTAATTTTTGCCGGAAAACAACTCGAGGACGGTCGCACACTCTCCGACTAC 358385 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || | || ||||| || || ||||| | |||||||| || Sbjct 358384 AATATTCAGAAAGAGTCGACCTTGCATTTGGTTTTGAGGCT 358344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203659561066130