Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq10 116 3e-21 seq44 102 7e-17 >seq10 Length=2329298 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | ||||| ||||| || ||||| || || ||| ||||| | Sbjct 1254106 AATGCAGATCTTCGTGAAAACTTTGACTGGTAAAACGATAACATTGGAAGTCGAACCATC 1254165 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| |||||| ||||| ||||| | ||| |||||| Sbjct 1254166 CGATACCATCGAAAATGTTAAGGCTAAAATTCAGGATAAGGAAGGAATTCCCCCAGATCA 1254225 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||| | ||||||||||| || || ||| |||||||| | | ||| | | |||||| Sbjct 1254226 GCAACGTCTTATCTTTGCTGGAAAGCAATTGGAAGATGGACGCACACTTT--CTGATTAC 1254283 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| |||||||||||||| ||| |||| | ||| | || ||||| Sbjct 1254284 AATATTCAAAAGGAATCTACTCTCCACTTGGTCCTCCGACTTCGTGGAGG 1254333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| | || ||||| || || ||| ||| |||||| | Sbjct 1252967 ATGCAAATTTTCGTGAAAACTCTTACTGGCAAGACGATCACCTTGGAAGTTGAACCCTCT 1253026 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||| || | || ||||||| Sbjct 1253027 GATACAATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAGGGCATTCCACCAGATCAA 1253086 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || | ||||||||||| || ||||| |||| ||| || | ||| | ||||||||| Sbjct 1253087 CAGCGTCTTATCTTTGCTGGAAAACAGTTGGAGGATGGTCGTACACTCT--CCGATTACA 1253144 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||| || || || ||||| ||||| | ||| | |||| ||||||| Sbjct 1253145 ATATCCAAAAAGAGTCTACCCTTCATCTTGTGCTGAGATTGAGAGGAGG 1253193 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| | || |||||||| || || ||| ||||| | Sbjct 1253423 ATGCAGATTTTCGTGAAAACTCTTACTGGCAAAACGATCACATTGGAAGTTGAACCTTCT 1253482 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| ||| ||||| ||||| | || |||||| Sbjct 1253483 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 1253542 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| |||| |||||||| || |||||| |||| ||| | || | | ||||| ||| Sbjct 1253543 CAACGACTCATCTTTGCTGGGAAACAATTGGAGGATGGCCGTACCTTATCTGATTATAAT 1253602 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||| || || || ||| |||| |||| Sbjct 1253603 ATTCAGAAGGAGTCCACCCTCCACTTGGTACTACG 1253637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || || || |||||||| || || || ||||| || Sbjct 1254791 ATGCAAATCTTCGTGAAGACTTTAACCGGCAAAACTATCACTTTGGAGGTTGAACCGTCA 1254850 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| || ||| || |||||||| | || ||||||| Sbjct 1254851 GACACAATTGAGAACGTTAAGGCCAAGATTCAGGACAAAGAAGGGATTCCTCCAGATCAA 1254910 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | ||||||||||| || || ||| ||||||| ||| || |||| || || Sbjct 1254911 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGACGGTCGCACTTTGTCCGACTATAAC 1254970 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| ||||| || |||| Sbjct 1254971 ATCCAGAAGGAATCCACTCTCCATTTGGT 1254999 >seq44 Length=1094211 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || | |||||||| ||||| || || |||||| | Sbjct 805342 ATGCAAATTTTCGTAAAGACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCT 805401 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||| ||| |||||||||||| | ||| ||||||| Sbjct 805402 GATACTATTGAAAATGTCAAAGCAAAGATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 805461 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | || |||||||| || |||||| |||| ||| || | || || |||| |||| Sbjct 805462 CAACGTCTGATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACAC--TGTCCGACTACA 805519 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||| || |||||||| || || ||| ||||| Sbjct 805520 ATATCCAAAAGGAATCAACCCTCCACTTGGTG 805551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428259287030225