Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq10 111 2e-19 >seq10 Length=2329298 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||| |||||| | || | ||| || || || || || || |||||||| | Sbjct 1255247 TTCCACCTCGAAGTCTAAGGACAAGATGCAAGGTTGACTCCTTCTGGATGTTATAATCGG 1255188 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | || ||| || | |||||| || ||||||||||| | ||||||||| |||| Sbjct 1255187 ACAGAGTGCGGCCATCCTCGAGTTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGAG 1255128 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 1255127 GAATTCCTTCCTTATCCTG 1255109 Score = 102 bits (112), Expect = 1e-16 Identities = 96/120 (80%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||||||| || || || ||| || || |||||||| || || || | | ||| || Sbjct 1252947 ACCAAATGTAGGGTCGACTCCTTTTGA-ATGTTATAATCAGACAGCGTGCGACCATCTTC 1252889 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||| |||||||||||||| || ||||||||||| |||||||| || Sbjct 1252888 TAGCTGTTTGCCAGCAAAGATCAATCTTTGCTGGTCTGGAGGAATTCCCTCTTTATCCTG 1252829 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | || |||||| || | || || || || ||||||||||| | Sbjct 1253651 TTCCACCCCGGAGACGTAGTACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCAG 1253592 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | || ||| || |||||||| |||||||| || | || ||||||||| |||| Sbjct 1253591 ATAAGGTACGGCCATCCTCCAATTGTTTCCCAGCAAAGATGAGTCGTTGCTGATCTGGAG 1253532 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| |||||||| Sbjct 1253531 GAATTCCTTCCTTATCTTG 1253513 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || | ||||| | ||||| || | ||||||||| ||| || ||||| ||||| || Sbjct 1254333 CCTCCACGAAGTCGGAGGACCAAGTGGAGAGTAGATTCCTTTTGA-ATATTGTAATCAGA 1254275 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || ||||| ||||||||||| || | | ||||||||| || || Sbjct 1254274 AAGTGTGCGTCCATCTTCCAATTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGG 1254215 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||||||||| ||||| || ||||| || ||| || Sbjct 1254214 AATTCCTTCCTTATCCTGAATTTTAGCCTTAACATTTTCGATGGTATCGGATGGTTCGAC 1254155 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||| | ||| || |||||||| || || ||||| | ||| || |||||| Sbjct 1254154 TTCCAATGTTATCGTTTTACCAGTCAAAGTTTTCACGAAGATCTGCATT 1254106 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | || || ||||||| ||| ||||| || || ||||| || || Sbjct 1253421 CCTCCGCGAAGACGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATGTTATAGTCGGAG 1253362 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||||| |||||||||||||| | || ||||| |||||| Sbjct 1253361 AGAGTACGACCATCCTCAAGCTGTTTACCAGCAAAAATCAAACGCTGTTGATCTGGAGGA 1253302 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 1253301 ATACCTTCTTTATCTTG 1253285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | || || ||||| ||||| || || || | || | | ||| || Sbjct 1254543 ACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGATAATGTGCGCCCATCCTCC 1254484 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| | ||||||||| || ||||| |||||||| ||||| Sbjct 1254483 AATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCTTG 1254425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743389823494400