Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq170 170 4e-37 >seq170 Length=322284 Score = 170 bits (188), Expect = 4e-37 Identities = 271/382 (71%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACG---ATTTGGCGGAA 101911 || ||||||| | ||||| || |||||| |||||| | |||| | ||| Sbjct 24028 AAAAAGAAGGCTGACTGGGCCATGGCTTGGATATCAAGCAAGTCAGCTAATTTCGGTGAA 24087 Query 101912 CTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATT 101971 ||| |||| ||||||||||| || ||||||||||| ||||| || ||||| ||| Sbjct 24088 AGAATAATTGCTTTTGCTGCAGTCGAGGGAATCTTCTTCAGTGGCAGTTTTGCATCAATT 24147 Query 101972 TTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCT 102031 |||||| ||||||| ||||| ||| |||||||||| || | ||||| || | || || Sbjct 24148 TTCTGGCTCAAGAAGAGGGGCATTATGCCTGGTCTGACTTTTTCCAACGAACTTATATCC 24207 Query 102032 AGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA- 102090 | |||||||| | ||| |||| ||||| || | |||| ||| | | |||| | Sbjct 24208 CGTGACGAAGGCTTACATTGCGATTTTGCTTGTTTAATGTTCAAACA---TCTTGTACAG 24264 Query 102091 TACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGA 102150 | |||| | || || | ||| | || || || | || || || ||||||||| | Sbjct 24265 AAGCCCAGC-AGGGATCGAATTATCGAGATAATCTCAGAGGCAGTAAAAATTGAACAGCA 24323 Query 102151 ATTTCTCACAGTTTCCCTGCCTGTTAA-ATTAGTGGGAATGAACTGCAAGTTGATGAGCC 102209 |||| | || | |||| ||||| || ||| |||| |||||||||| ||||||| ||| Sbjct 24324 ATTTTTGACCGACGCCCTACCTGTAAATCTTATTGGG-ATGAACTGCATGTTGATGTGCC 24382 Query 102210 AGTACATTGAATTTGTGGCAGA 102231 ||||||| || || || ||||| Sbjct 24383 AGTACATCGAGTTCGTCGCAGA 24404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989397681433725