Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3563 185 7e-42 seq3509 178 1e-39 >seq3563 Length=1406 Score = 185 bits (204), Expect = 7e-42 Identities = 258/359 (72%), Gaps = 2/359 (1%) Strand=Plus/Minus Query 20844 GTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAACGGACGCGGG 20903 || |||||||| | | | ||||||| || ||| |||| |||||| || | ||| Sbjct 406 GTGAAGTCCTCTATATTCTCCACCTTCCTTTTAATGATCAGTTTCGGAAAAGGCCTCGGA 347 Query 20904 GTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCC 20963 || ||||| ||| || |||| ||| || || || || || || || Sbjct 346 ACTCTTTTAAGCTGCTCTTGCAACGGTTCAATGTGATTCAGATATACATGAGCATCTCCA 287 Query 20964 AAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGG 21023 ||||| || ||||| ||||| || ||| ||| ||||||||||| | || || || || Sbjct 286 AAGGTATGGACAAAATCTCCAGGCTTCAAGCCTGTGACGTGAGCAACCATGTAAGTAAGA 227 Query 21024 AGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTAC 21083 ||||||||||||||||||||||| |||||||| || ||||||||||| |||||||| || Sbjct 226 AGGGCGTAGCTGGCGATGTTAAAAGGGACCCCCAGTCCCATGTCGGCAGACCTCTGATAG 167 Query 21084 AGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAAC-GTGACAAGGAGG 21142 |||||||| || ||||| || || || || ||||| || | | ||| ||||| || Sbjct 166 AGCTGGCACGATAGCTCTCCGTTTGCAACATAGAACTG-GACGAGGCAGTGGCAAGGCGG 108 Query 21143 GAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGT 21201 ||||||||| | | || ||| | |||||||| ||| ||| | ||| || || |||| Sbjct 107 AAGAGCCATCTGAGGGATGTCGACTGGGTTCCAGGCGGTCATGATGATTCGGCGGTCGT 49 >seq3509 Length=1415 Score = 178 bits (196), Expect = 1e-39 Identities = 206/275 (75%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 20928 GGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGG 20987 || |||| ||| || || || || || || || ||||| || ||||| ||||| || Sbjct 1094 GGTTCAATGTGATTCAGATATACATGAGCATCTCCAAAGGTATGGACAAAATCTCCAGGC 1153 Query 20988 GTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047 ||| ||| ||||||||||| | || || || || ||||||||||||||||||||||| Sbjct 1154 TTCAAGCCTGTGACGTGAGCAACCATGTAAGTAAGAAGGGCGTAGCTGGCGATGTTAAAA 1213 Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGA 21107 |||||||| || ||||||||||| |||||||| || |||||||| || ||||| || Sbjct 1214 GGGACCCCCAGTCCCATGTCGGCAGACCTCTGATAGAGCTGGCACGATAGCTCTCCGTTT 1273 Query 21108 GCCACGTAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC 21166 || || || ||||| || | | || ||||| || ||||||||| | | || ||| | Sbjct 1274 GCAACATAGAACTG-GACGAGGCAATGGCAAGGCGGAAGAGCCATCTGAGGGATGTCGAC 1332 Query 21167 GGGGTTCCACGCGCACATAACGATGCGCCGATCGT 21201 |||||||| ||| ||| | ||| || || |||| Sbjct 1333 TGGGTTCCAGGCGGTCATGATGATTCGGCGGTCGT 1367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427699387323600