Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10 118 1e-21 seq39 116 4e-21 seq44 105 7e-18 seq13 82.4 8e-11 >seq10 Length=2329298 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | || ||||||| || |||||||| || || || || || Sbjct 1254561 CCTCCTCGCAGGCGAAGCACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAT 1254502 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| | || || | |||||||||||| | |||| |||||||||||| || || Sbjct 1254501 AATGTGCGCCCATCCTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 1254442 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| | || | |||| | ||| | ||||| | |||||| || Sbjct 1254441 ATGCCTTCTTTGTC-TTGAATCTTAGCCTTTACATTTTCAATAGTGTCAGAGGGCTCGAC 1254383 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | ||||| || || || || ||||| || ||||||||| || Sbjct 1254382 TTCCAAGGTGATGGTCTTCCCAGTTAAAGTCTTTACAAAAATTTGCATACCT 1254331 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||||| ||||| |||| || ||||| ||||| ||||| |||||| | Sbjct 1253877 CCACCACGTAGACGCAGAACTAGATGAAGTGTTGACTCCTTTTGGATGTTGTAATCGGAC 1253818 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | ||| ||||| ||| |||||| ||||||||||| || || Sbjct 1253817 AAAGTGCGACCATCTTCCAACTGCTTACCGGCAAAGATCAATCGTTGCTGATCTGGTGGA 1253758 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| || | | || | || || | || || ||| Sbjct 1253757 ATACCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATCGTATCTGATGGTTCAACC 1253698 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| |||||||| || || ||||| || ||||| Sbjct 1253697 TCCAATGTAATTGTCTTACCGGTCAAAGTCTTAACGAAAATCTGCAT 1253651 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||||||||| || || |||||| | ||| | || || | |||| Sbjct 1253169 TGAAGGGTAGACTCTTTTTGGATATTGTAATCGGAGAGTGTACGACCATCCTCCAACTGT 1253110 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| ||||| || ||||| || || ||||| |||||||| ||| |||| Sbjct 1253109 TTTCCAGCAAAGATAAGACGCTGTTGATCTGGTGGAATGCCCTCTTTGTC-TTGAATTTT 1253051 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | | || | ||| || | ||| || || || | ||| | ||||||||| || Sbjct 1253050 AGCTTTCACATTCTCAATTGTATCAGAGGGTTCAACTTCCAAGGTGATCGTCTTGCCAGT 1252991 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| |||||||| Sbjct 1252990 AAGAGTTTTCACGAAAATTTGCAT 1252967 Score = 109 bits (120), Expect = 5e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || |||||||| ||| || |||| |||||| | || |||||| Sbjct 1254987 GTGGATTCCTTCTGGATGTTATAGTCGGACAAAGTGCGACCGTCTTCCAATTGCTTACCA 1254928 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||| ||||| ||||| || ||||||||||| ||| | || | || Sbjct 1254927 GCAAAGATAAGACGTTGTTGATCTGGAGGAATCCCTTCTTTGTC-CTGAATCTTGGCCTT 1254869 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | |||||| | || || ||||| | || | || |||||||| || || Sbjct 1254868 AACGTTCTCAATTGTGTCTGACGGTTCAACCTCCAAAGTGATAGTTTTGCCGGTTAAAGT 1254809 Query 139747 TTTTACGAATATTTGCATAGCT 139768 || ||||| ||||||||| || Sbjct 1254808 CTTCACGAAGATTTGCATACCT 1254787 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||| || | || || || || ||||||||||| ||| Sbjct 1253421 CCTCCGCGAAGACGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATGTTATAGTCGGAG 1253362 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||||||||||||| | |||| ||| || ||||| ||||| Sbjct 1253361 AGAGTACGACCATCCTCAAGCTGTTTACCAGCAAAAATCAAACGCTGTTGATCTGGAGGA 1253302 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || |||||| ||| | | ||| | ||| || | ||||| || Sbjct 1253301 ATACCTTCTTTATCTTGGATTTTGGCTTTCACATTTTCAATTGTATCAGAAGGCTCAACT 1253242 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || || || |||| |||||||| || || |||||| || Sbjct 1253241 TCTAATGTAATTGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCATACCT 1253191 Score = 100 bits (110), Expect = 3e-16 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | ||||| || |||||||| || ||||| | ||||| || | ||||| Sbjct 1254315 ACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCAGAAAGTGTGCGTCCA-TCTTC 1254257 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | || || |||||| |||| |||||||||||||| || || || ||||| || || | Sbjct 1254256 CAATTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATC-CT 1254198 Query 139675 GATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| | ||| | | ||| | || |||| || || || || | || | ||| | Sbjct 1254197 GAATTTTAGCCTTAACATTTTCGATGGTATCGGATGGTTCGACTTCCAATGTTATCGTTT 1254138 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || ||||| ||||| ||||| || ||||| Sbjct 1254137 TACCAGTCAAAGTTTTCACGAAGATCTGCAT 1254107 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||||||||| || |||| ||||| |||||||| ||| Sbjct 1252935 GTCGACTCCTTTTGAATGTTATAATCAGACAGCGTGCGACCATCTTCTAGCTGTTTGCCA 1252876 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | |||||| || ||||| || || ||||| || ||| | || | || Sbjct 1252875 GCAAAGATCAATCTTTGCTGGTCTGGAGGAATTCCCTCTTTATC-CTGAATCTTAGCCTT 1252817 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | ||| | || || | ||||| || || | ||| | || ||||| || | || Sbjct 1252816 AACGTTTTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATAGTTTTGCCTGTTAGTGT 1252757 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 1252756 CTTCACAAAGATCTGCAT 1252739 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||||| ||| | || | || ||||| ||||| ||||| |||||| | Sbjct 1254105 CCACCACGTAGACGCAGAACCAGATGGAGAGTTGACTCCTTTTGGATGTTGTAATCGGAC 1254046 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || | |||||||| ||| |||| || ||||||||||| || || Sbjct 1254045 AAAGTGCGACCATCCTCTAATTGTTTACCGGCAAAGATGAGTCGTTGCTGATCCGGTGGG 1253986 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| || ||| | | || | || |||| ||||| || Sbjct 1253985 ATACCCTCCTTATCTTGGATCTTAGCTTTAACATTCTCAATGGTATCGGATGGCTCGACT 1253926 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || ||||| ||||| || ||||| || || ||||| Sbjct 1253925 TCCAGAGTGATAGTTTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 1253879 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||||||| || |||| || ||||| |||||||| Sbjct 1255215 GTTGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGGCCATCCTCGAGTTGTTTACCG 1255156 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | |||| |||||||||||| ||||| || ||||| || || |||||| || Sbjct 1255155 GCAAAAATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATTTTAGCCTTG 1255096 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | || || | || || || || | || | ||| || || ||||| || Sbjct 1255095 ACATTTTCAATGGTATCAGAAGGTTCAACTTCCAAAGTGATCGTTTTACCCGTCAAGGTC 1255036 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 1255035 TTCACAAAAATCTGCAT 1255019 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || ||||| |||||||| Sbjct 1253649 CCACCCCGGAGACGTAGTACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCAGAT 1253590 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || | ||||| |||||| |||| || ||||||||||| ||||| Sbjct 1253589 AAGGTACGGCCATCCTCCAATTGTTTCCCAGCAAAGATGAGTCGTTGCTGATCTGGAGGA 1253530 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | |||| || | | ||| | ||||| | || || || Sbjct 1253529 ATTCCTTCCTTATC-TTGAATCTTTGCCTTCACATTTTCAATAGTGTCAGAAGGTTCAAC 1253471 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | ||| ||||| || | ||||| ||||| || |||||| || Sbjct 1253470 TTCCAATGTGATCGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCATACCT 1253419 >seq39 Length=1160777 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || ||||| | |||||||| || || ||||| |||||| Sbjct 535149 CCACCTCGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAATCGGAA 535090 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || ||||||||||| || | |||||||| || ||||| || || Sbjct 535089 AGTGTGCGACCATCCTCAAGCTGTTTACCGGCGAAAATCAGACGCTGTTGATCTGGGGGG 535030 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || ||| | | ||| | ||||| | |||||| ||| Sbjct 535029 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTTTCAATAGTGTCTGAGGGCTCGACC 534970 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| ||||| | ||||||||||| || ||||| Sbjct 534969 TCAAGAGTGATGGTCTTACCGGTTAGGGTTTTTACGAAGATCTGCAT 534923 >seq44 Length=1094211 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || ||||| || || || ||| || ||| | || || Sbjct 805550 ACCAAGTGGAGGGTTGATTCCTTTTGGATATTGTAGTCGGACAGTGTACGACCATCCTCC 805491 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||||||| ||||||||||||| ||||| || || || |||||||| || || Sbjct 805490 AATTGTTTACCAGCAAAGATCAGACGTTGTTGATCTGGGGGAATACCTTCTTTATC-TTG 805432 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | |||| ||| | | ||| | || || | ||| || ||||||| || | ||||| Sbjct 805431 AATCTTTGCTTTGACATTTTCAATAGTATCAGAGGGTTCGACCTCAAGAGTGATGGTCTT 805372 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || |||||||| |||||||| Sbjct 805371 GCCCGTTAGGGTCTTTACGAAAATTTGCAT 805342 >seq13 Length=2077869 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 |||| | ||||| || ||||| || || ||||| ||||||||| ||| | || | || Sbjct 1820501 TGTTCAACGCAATAGAGGCCAAATTACATACGGCTATTTCGTCGGCGGCCGAGTACTCTA 1820442 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 | ||||| | || | |||||| ||||| || ||| ||| || || || || | Sbjct 1820441 CAATTTCTGTGCATAGATTGCTACATTTAATAGTCCCGATATTCTGCTGGTTACTCTTTC 1820382 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804 ||| || ||||||||||||| ||| || || || || || || | ||| ||| || | Sbjct 1820381 TGTTGCATGCGTCCTTGTATAACATATAAGGAGTTCCTGTCTCTACCTGAGATTCAATTA 1820322 Query 153805 TAG 153807 ||| Sbjct 1820321 TAG 1820319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495972879244000