Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq170 116 4e-21 seq462 82.4 7e-11 >seq170 Length=322284 Score = 116 bits (128), Expect = 4e-21 Identities = 184/262 (70%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 |||||||| || |||||||| |||||||| ||||| | ||| || || | |||||| Sbjct 24257 AGATGTTTGAACATTAAACAAGCAAAATCGCAATGTAAGCCTTCGTCACGGGATATAAGT 24198 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 ||||| ||||| || | || ||||| | || | || || | ||| || |||| ||| Sbjct 24197 TCGTTGGAAAAAGTCAGACCAGGCATAATGCCCCTCTTCTTGAGCCAGAAAATTGATGCA 24138 Query 13974 AA--TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAA 14031 || || | | ||| ||| |||||||| ||||||||||| || |||| || ||| || | Sbjct 24137 AAACTGCCACTGAA--GAAGATTCCCTCGACTGCAGCAAAAGCAATTATTCTTTCACCGA 24080 Query 14032 ACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAAT 14091 | ||| ||| | |||||||| | ||||| |||| || ||||||| | | Sbjct 24079 AATTAGCTGACTTGCTTGATATCCAAGCCATGGCCCAGTCAGCCTTCTTTTTAACACAGG 24020 Query 14092 CCATTGTTTCAATAGCATTAAA 14113 | |||||||| || || || Sbjct 24019 GTAAGGTTTCAATTGCGTTGAA 23998 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 ||||| ||||||||||| || || | || |||| || |||||||| || ||||| || Sbjct 24600 ATAACACCCATTTTTTGGTACTCGCCCACCTTTTTCTCGAAGAAGTTCGTCTTACCATCA 24541 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTT 13661 ||||| || ||||||| |||||||| |||||| Sbjct 24540 AGTGAGATTATTTCCATGAAATCAAAAGGATTT 24508 >seq462 Length=18512 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 131646 GGAGTATAAGAGAGATCCAAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGA 131705 ||| |||||| |||||||||||| ||||| ||||| ||||| || || || || ||| Sbjct 15186 GGACTATAAGCCAGATCCAAAAAAAATGCACAATGGTACAATTGAGTATACTTCTAGAGA 15245 Query 131706 TATGCATAACGGTGTATCCCCGTCTAGGCGAGGAGATTTAGAAATTTTAGGATATTGTAT 131765 | || || |||||| || | | | |||| ||| ||||||||||||||||| | | Sbjct 15246 TGCACACAATGGTGTA---CCAACAATGAGAGGCGATCTAGAAATTTTAGGATATAATCT 15302 Query 131766 AATAAAATGGTTAGGCGGTAAATTGCCATGGGAAAATGA 131804 ||| | ||| | || | | | | || ||||| || || Sbjct 15303 TATACATTGGCTCGGAGTTTCACTTCCCTGGGAGAAAGA 15341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479639879963000