Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq44 122 9e-23 seq10 122 9e-23 seq39 98.7 1e-15 seq13 87.8 2e-12 seq22 82.4 8e-11 >seq44 Length=1094211 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| || ||||| ||| || ||| | || || | |||||||||| Sbjct 805538 GTTGATTCCTTTTGGATATTGTAGTCGGACAGTGTACGACCATCCTCCAATTGTTTACCA 805479 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||||||||| ||||| || || || |||||||| || ||| ||| ||| Sbjct 805478 GCAAAGATCAGACGTTGTTGATCTGGGGGAATACCTTCTTTATCTTGAATCTTTGCTTTG 805419 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | || || | |||||| || |||| ||| | |||||||| || | || Sbjct 805418 ACATTTTCAATAGTATCAGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTC 805359 Query 143168 TTTACGAATATTTGCAT 143184 |||||||| |||||||| Sbjct 805358 TTTACGAAAATTTGCAT 805342 >seq10 Length=2329298 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||||| ||||| ||||| ||| || || ||||| |||||||||||| | Sbjct 1253877 CCACCACGTAGACGCAGAACTAGATGAAGTGTTGACTCCTTTTGGATGTTGTAATCGGAC 1253818 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | || ||||| ||| |||||| ||||||||||| || || Sbjct 1253817 AAAGTGCGACCATCTTCCAACTGCTTACCGGCAAAGATCAATCGTTGCTGATCTGGTGGA 1253758 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| || | | || | ||| || | ||||| || Sbjct 1253757 ATACCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATCGTATCTGATGGTTCAACC 1253698 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| |||||||| || || ||||| || ||||| Sbjct 1253697 TCCAATGTAATTGTCTTACCGGTCAAAGTCTTAACGAAAATCTGCAT 1253651 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | || | || || |||| || || ||||| || || ||||| || Sbjct 1254561 CCTCCTCGCAGGCGAAGCACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAT 1254502 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | || || | ||||||||||||| | |||| |||||||||||| || || Sbjct 1254501 AATGTGCGCCCATCCTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 1254442 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| || |||| | ||| | ||||| | ||| || ||| Sbjct 1254441 ATGCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTGTCAGAGGGCTCGACT 1254382 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | ||||| || || || || ||||| || ||||||||| || Sbjct 1254381 TCCAAGGTGATGGTCTTCCCAGTTAAAGTCTTTACAAAAATTTGCATACCT 1254331 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | || ||||| || || ||||| || ||| || |||| |||||| Sbjct 1254999 ACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAGTCGGACAAAGTGCGACCGTCTTCC 1254940 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| ||||||||| |||| |||||||| ||||| ||||| || ||||||||||| | Sbjct 1254939 AATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATCCCTTCTTTGTCCTGA 1254880 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || || | | || | ||||| | ||||| || || | ||| | || ||| Sbjct 1254879 ATCTTGGCCTTAACGTTCTCAATTGTGTCTGACGGTTCAACCTCCAAAGTGATAGTTTTG 1254820 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||||| || || || ||||| ||||||||| || Sbjct 1254819 CCGGTTAAAGTCTTCACGAAGATTTGCATACCT 1254787 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 |||||||| ||||| || |||||||| | ||||| || | ||||| | ||| || || Sbjct 1254303 GTAGATTCCTTTTGAATATTGTAATCAGAAAGTGTGCGTCCA-TCTTCCAATTGCTTTCC 1254245 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| |||| |||||||||||||| || || || ||||| || || |||||| || Sbjct 1254244 AGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATTTTAGCCTT 1254185 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | || || | ||||| ||||| | || | ||| || || ||||| || Sbjct 1254184 AACATTTTCGATGGTATCGGATGGTTCGACTTCCAATGTTATCGTTTTACCAGTCAAAGT 1254125 Query 143167 TTTTACGAATATTTGCAT 143184 ||| ||||| || ||||| Sbjct 1254124 TTTCACGAAGATCTGCAT 1254107 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||||| ||| | ||| | || || || ||||| |||||||||||| | Sbjct 1254105 CCACCACGTAGACGCAGAACCAGATGGAGAGTTGACTCCTTTTGGATGTTGTAATCGGAC 1254046 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || | ||||||||| ||| |||| || ||||||||||| || || Sbjct 1254045 AAAGTGCGACCATCCTCTAATTGTTTACCGGCAAAGATGAGTCGTTGCTGATCCGGTGGG 1253986 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || || || ||| | | || | || || | || || ||| Sbjct 1253985 ATACCCTCCTTATCTTGGATCTTAGCTTTAACATTCTCAATGGTATCGGATGGCTCGACT 1253926 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || ||||| |||||||| ||||| || || ||||| Sbjct 1253925 TCCAGAGTGATAGTTTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 1253879 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||||||||| | || ||||| || || ||||| || ||| Sbjct 1253421 CCTCCGCGAAGACGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATGTTATAGTCGGAG 1253362 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || || |||||||||||| | |||| ||| || ||||| ||||| Sbjct 1253361 AGAGTACGACCATCCTCAAGCTGTTTACCAGCAAAAATCAAACGCTGTTGATCTGGAGGA 1253302 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| ||| | | ||| | || || | || || ||| Sbjct 1253301 ATACCTTCTTTATCTTGGATTTTGGCTTTCACATTTTCAATTGTATCAGAAGGCTCAACT 1253242 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || || || |||| ||||||||| || || |||||| || Sbjct 1253241 TCTAATGTAATTGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCATACCT 1253191 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || ||||| |||||| || |||| || |||||||||||||| Sbjct 1255215 GTTGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGGCCATCCTCGAGTTGTTTACCG 1255156 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | |||| |||||||||||| ||||| || ||||| || || ||||| || Sbjct 1255155 GCAAAAATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATTTTAGCCTTG 1255096 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | || || | ||||| ||||| | ||| | ||| || || ||||| || Sbjct 1255095 ACATTTTCAATGGTATCAGAAGGTTCAACTTCCAAAGTGATCGTTTTACCCGTCAAGGTC 1255036 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 1255035 TTCACAAAAATCTGCAT 1255019 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || | |||||| |||||| |||| || ||||||||||| ||||| || ||||| || Sbjct 1253577 TCCTCCAATTGTTTCCCAGCAAAGATGAGTCGTTGCTGATCTGGAGGAATTCCTTCCTTA 1253518 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| ||| || | | ||| | ||||| | ||||| ||||| | || | | Sbjct 1253517 TCTTGAATCTTTGCCTTCACATTTTCAATAGTGTCAGAAGGTTCAACTTCCAATGTGATC 1253458 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || ||||| || | ||||| ||||| || |||||| || Sbjct 1253457 GTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCATACCT 1253419 >seq39 Length=1160777 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | || || || | ||||| || || || |||||||||||| Sbjct 535149 CCACCTCGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAATCGGAA 535090 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || || || |||||||| || | |||||||| || ||||| || || Sbjct 535089 AGTGTGCGACCATCCTCAAGCTGTTTACCGGCGAAAATCAGACGCTGTTGATCTGGGGGG 535030 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || ||| | | ||| | ||||| | ||| || || Sbjct 535029 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTTTCAATAGTGTCTGAGGGCTCGACC 534970 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||| | ||||||||||| || ||||| Sbjct 534969 TCAAGAGTGATGGTCTTACCGGTTAGGGTTTTTACGAAGATCTGCAT 534923 >seq13 Length=2077869 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 157055 GCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCC 157114 ||||| || || | |||||||||||| ||||||||| || | || | ||| ||||| Sbjct 1820493 GCAATAGAGGCCAAATTACATACGGCTATTTCGTCGGCGGCCGAGTACTCTACAATTTCT 1820434 Query 157115 GCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAA 157174 | || | |||||| ||||| || ||| ||| || || || || | |||||| Sbjct 1820433 GTGCATAGATTGCTACATTTAATAGTCCCGATATTCTGCTGGTTACTCTTTCTGTTGCAT 1820374 Query 157175 GCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGAT 157227 ||||||||||||||||| || || || || || || | ||| ||| || || Sbjct 1820373 GCGTCCTTGTATAACATATAAGGAGTTCCTGTCTCTACCTGAGATTCAATTAT 1820321 >seq22 Length=1532643 Score = 82.4 bits (90), Expect = 8e-11 Identities = 114/156 (73%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 60396 AATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGATTGCTACC 60455 || |||||||| ||| || || ||||| | ||| || || || || || ||||| | Sbjct 643081 AACGTTGCCCAGATCTCCAACATGTCTTTCGGCACTGTCCGGGGCTCCGTG-TTGCTTCT 643139 Query 60456 CGT-CGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAATTCGT 60514 | |||||| || || | ||||| || |||||||| || || | || || ||||||| Sbjct 643140 TGCACGGATTGAAGTGGGCACCGGCAGAGGTACAGCCATTTGTGTTATCACCGAATTCGT 643199 Query 60515 GTACGTGAAAACCGTGCAGTCCTTTCGGCAAGTTCA 60550 | || ||||||||||| || || ||| |||||| || Sbjct 643200 GCACATGAAAACCGTGGAGGCC-TTCCGCAAGTCCA 643234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506921267792400