Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq10 116 2e-21 seq44 102 5e-17 >seq10 Length=2329298 Score = 116 bits (128), Expect = 2e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | || | |||||| || | ||||||||||| || |||||||| ||||| Sbjct 1254562 ACCTCCTCGCAGGCGAAGCACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGA 1254503 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || | || |||||||| || ||| ||| || ||||||||||| || | || Sbjct 1254502 TAATGTGCGCCCATCCTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGG 1254443 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || |||| |||| |||| ||| ||| ||||| ||| | Sbjct 1254442 AATGCCTTCTTTGTCTTGAATCTTAGCCT---TTACATTTTCAATAGTGTCAGAGGGCTC 1254386 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| || || || || || || | ||| ||||| ||||||||||| Sbjct 1254385 GACTTCCAAGGTGATGGTCTTCCCAGTTAAAGTCTTTACAAAAATTTGCAT 1254335 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | || ||| | ||| | || ||||||||||| ||||||||||| || Sbjct 1253194 ACCTCCTCTCAATCTCAGCACAAGATGAAGGGTAGACTCTTTTTGGATATTGTAATCGGA 1253135 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | || ||||| || |||||| ||| || | ||| || || || | || Sbjct 1253134 GAGTGTACGACCATCCTCCAACTGTTTTCCAGCAAAGATAAGACGCTGTTGATCTGGTGG 1253075 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||| ||||| || ||| ||| || | | ||| || || ||||| ||| Sbjct 1253074 AATGCCCTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATTGTATCAGAGGGTTCAAC 1253015 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || ||||| || || ||||||||||| |||||||||||||| Sbjct 1253014 TTCCAAGGTGATCGTCTTGCCAGTAAGAGTTTTCACGAAAATTTGCAT 1252967 Score = 104 bits (114), Expect = 1e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || || ||||| |||||||||||||| | || || || ||| Sbjct 1254315 ACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCAGAAAGTGTGCGTCCATCTTCC 1254256 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||||||| ||| || | ||||||||| || | ||| || ||||| || || | Sbjct 1254255 AATTGCTTTCCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGA 1254196 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || || ||| |||| || |||| ||||||||| Sbjct 1254195 ATTTTAGCC---TTAACATTTTCGATGGTATCGGATGGTTCGACTTCCAATGTTATCGTT 1254139 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | |||||| ||||| || ||||| Sbjct 1254138 TTACCAGTCAAAGTTTTCACGAAGATCTGCAT 1254107 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || ||||| || || ||||| |||||||| || | | || ||| Sbjct 1253631 ACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCAGATAAGGTACGGCCATCCTCC 1253572 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| ||| || | |||||||| || | || || ||||| || || | Sbjct 1253571 AATTGTTTCCCAGCAAAGATGAGTCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 1253512 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| |||| | || ||| ||| ||||| |||| ||| |||| || |||||| Sbjct 1253511 ATCTTTGCCT---TCACATTTTCAATAGTGTCAGAAGGTTCAACTTCCAATGTGATCGTT 1253455 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||||||||| |||||||| ||||| Sbjct 1253454 TTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 1253423 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || ||||| || || || || || || || | || || ||| ||| Sbjct 1254771 ACCAAGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCGGAAAGTGTGCGTCCGTCTTCC 1254712 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| ||| ||||| | |||||||| | ||| |||||||| || || | Sbjct 1254711 AATTGCTTGCCAGCAAAAATTAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGA 1254652 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| ||| || || ||| ||| ||||| |||| ||| |||| ||| |||||| Sbjct 1254651 ATCTTAGCC---TTCACATTTTCAATAGTGTCAGAAGGTTCAACTTCCAAAGTAATCGTT 1254595 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | || || || ||||| ||||| Sbjct 1254594 TTGCCAGTCAACGTCTTAACAAAAATCTGCAT 1254563 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | || || || || || || || || || |||||| || | ||| ||| Sbjct 1254999 ACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAGTCGGACAAAGTGCGACCGTCTTCC 1254940 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| ||| || | |||||| || || | || || |||||||| || | Sbjct 1254939 AATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATCCCTTCTTTGTCCTGA 1254880 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| ||| || || | | ||| ||||| |||| ||| |||| ||| || ||| Sbjct 1254879 ATCTTGGCC---TTAACGTTCTCAATTGTGTCTGACGGTTCAACCTCCAAAGTGATAGTT 1254823 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | ||| || ||||| |||||||| Sbjct 1254822 TTGCCGGTTAAAGTCTTCACGAAGATTTGCAT 1254791 >seq44 Length=1094211 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | || || || ||||| |||||||| || |||| | | || || Sbjct 805551 CACCAAGTGGAGGGTTGATTCCTTTTGGATATTGTAGTCGGACAGTGTACGACCATCCTC 805492 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 |||||| || ||| ||| || | |||||| || || | ||| || |||||||| || Sbjct 805491 CAATTGTTTACCAGCAAAGATCAGACGTTGTTGATCTGGGGGAATACCTTCTTTATCTTG 805432 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| ||| || ||| ||| || || ||||| || || ||||| || || || Sbjct 805431 AATCTTTGCTTTGACATTTTCAATAGTATCAGAGGGTTCGACCTCAAGAGTGATGGTCTT 805372 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||||| || || |||||||||||||||||| || Sbjct 805371 GCCCGTTAGGGTCTTTACGAAAATTTGCATGGTT 805338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318720508426110