Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq3563 172 4e-38 seq3509 167 2e-36 >seq3563 Length=1406 Score = 172 bits (190), Expect = 4e-38 Identities = 261/365 (72%), Gaps = 5/365 (1%) Strand=Plus/Minus Query 25347 AAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 25406 ||||| || | |||||||| |||| || || ||||| | ||||| || || || | Sbjct 403 AAGTCCTCTATATTCTCCACCTTCCTTTTAATGATCAGTTTCGGAAAAGGCCTCGGAACT 344 Query 25407 CTCTCGAGCTGAGTCTT-CAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 25465 || | ||||| |||| || |||||| | ||||| ||| || || ||||| ||||| | Sbjct 343 CTTTTAAGCTGC-TCTTGCAACGGTTCAATGTGATTCAGATATACATGAGCATCTCCAAA 285 Query 25466 AGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGA 25524 || |||||||| ||||| || ||| |||| | | |||| ||| | |||||| || || | Sbjct 284 GGTATGGACAAAATCTCCAGGCTTCAAGCCTG-TGACGTGAGCAACCATGTAAGTAAGAA 226 Query 25525 GAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAG 25584 | |||||||||||||||||| || ||||| | ||||||| | | |||||||| ||| Sbjct 225 GGGCGTAGCTGGCGATGTTAAAAGGGACCCCCAGTCCCATGT-CGGCAGACCTCTGATAG 167 Query 25585 AGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGA 25644 ||||| ||||| |||||| ||| || || ||||| | | || ||| || ||| Sbjct 166 AGCTGGCACGATAGCTCTCCGTTTGCAACATAGAACTGGACGAGGCAGTGGCAAGGCGGA 107 Query 25645 AGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCT 25704 ||||| || | | ||| |||||||||||| || |||||| | | ||| | Sbjct 106 AGAGCCATCTGAGGGATGTCGACTGGGTTCCAGGCGGTCATGATGATTCGGCGGTCGTTA 47 Query 25705 GGGTT 25709 ||||| Sbjct 46 GGGTT 42 >seq3509 Length=1415 Score = 167 bits (184), Expect = 2e-36 Identities = 252/352 (72%), Gaps = 5/352 (1%) Strand=Plus/Plus Query 25360 TCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAG 25419 |||||||| |||| || || ||||| | ||||| || || || | || | ||||| Sbjct 1026 TCTCCACCTTCCTTTTAATGATCAGTTTCGGAAAAGGCCTCGGAACTCTTTTAAGCTGC- 1084 Query 25420 TCTT-CAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAAC 25478 |||| || |||||| | ||||| ||| || || ||||| ||||| | || |||||||| Sbjct 1085 TCTTGCAACGGTTCAATGTGATTCAGATATACATGAGCATCTCCAAAGGTATGGACAAAA 1144 Query 25479 TCTCCCGG-TTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGC 25537 ||||| || ||| |||| | | |||| ||| | |||||| || || || ||||||||| Sbjct 1145 TCTCCAGGCTTCAAGCCTG-TGACGTGAGCAACCATGTAAGTAAGAAGGGCGTAGCTGGC 1203 Query 25538 GATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGA 25597 ||||||||| || ||||| | ||||||| | | |||||||| |||||||| ||||| | Sbjct 1204 GATGTTAAAAGGGACCCCCAGTCCCATGT-CGGCAGACCTCTGATAGAGCTGGCACGATA 1262 Query 25598 GCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGC 25657 ||||| ||| || || ||||| | | | ||| || |||||||| || | Sbjct 1263 GCTCTCCGTTTGCAACATAGAACTGGACGAGGCAATGGCAAGGCGGAAGAGCCATCTGAG 1322 Query 25658 CCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT 25709 | ||| |||||||||||| || |||||| | | ||| | ||||| Sbjct 1323 GGATGTCGACTGGGTTCCAGGCGGTCATGATGATTCGGCGGTCGTTAGGGTT 1374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340076682950235