Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq170 154 2e-32 seq127 123 3e-23 seq52 123 3e-23 seq51 122 1e-22 seq189 114 1e-20 >seq170 Length=322284 Score = 154 bits (170), Expect = 2e-32 Identities = 287/419 (68%), Gaps = 2/419 (0%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 || || || || || |||||||| ||||||| || ||||| || | |||| |||| Sbjct 24404 TCTGCGACGAACTCGATGTACTGGCACATCAACATGCAGTTCATCCCAATAAGATTTACA 24345 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 ||||| ||||||||||| || | | || ||| || || ||| | || || || Sbjct 24344 GGTAGGGCGTCGGTCAAAAATTGCTGTTCAATTTTTACTGCCTCTGAGATTATCTCGATA 24285 Query 93047 ACTCTACTATTTGGTGGTTTT-TGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 | || | | || ||| || ||||| | || ||| ||||||| || ||||| ||| Sbjct 24284 ATTCGA-TCCCTGCTGGGCTTCTGTACAAGATGTTTGAACATTAAACAAGCAAAATCGCA 24226 Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 |||||| |||||||| || ||||| | || ||| || || | ||| || | | || Sbjct 24225 ATGTAAGCCTTCGTCACGGGATATAAGTTCGTTGGAAAAAGTCAGACCAGGCATAATGCC 24166 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 | ||||||||||| || ||||| |||||||| ||| || || || || || || || Sbjct 24165 CCTCTTCTTGAGCCAGAAAATTGATGCAAAACTGCCACTGAAGAAGATTCCCTCGACTGC 24106 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285 ||||| || | || | ||| | ||||| || || || || ||||| | || Sbjct 24105 AGCAAAAGCAATTATTCTTTCACCGAAATTAGCTGACTTGCTTGATATCCAAGCCATGGC 24046 Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||| || || || || |||| ||| |||| ||||| || ||||| || ||| | |||| Sbjct 24045 CCAGTCAGCCTTCTTTTTAACACAGGGTAAGGTTTCAATTGCGTTGAAGAGGAACTCTC 23987 Score = 150 bits (166), Expect = 2e-31 Identities = 191/263 (73%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || |||||||| | | |||||||| || |||||||| || || ||||||||| Sbjct 23912 ATATAAGTGTCGATTAAAATACTGTACATTTCCGAGTGGACATTTTCTATGGCAATTTGG 23853 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || ||||||||| | | |||||||| ||| ||||| || || || | ||| |||||| Sbjct 23852 AAGCCGTAGAAAAAGCGAGCTTCCGGGATTTGCACCTCCTGGCTGAAACGCTCCACGAGA 23793 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||| || || || ||||| || || || ||||| | | || || || || Sbjct 23792 TTTTCATTTACAATTCCGTCGGAGGCAGCGAAGAAAGCTAGCACGTGTGAAATGAAGTGC 23733 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCG 93601 |||||| | || || || ||||||| || || || ||||| | ||||| || Sbjct 23732 TTCTCACCGGCTGATAGTTTCTCCCAATGCTGTAAGTCATTCGAAAGGTTTACTTCCTCC 23673 Query 93602 ACAGTCCAAAACGATGCTTCTGC 93624 || ||||||||||| ||||| || Sbjct 23672 ACTGTCCAAAACGAGGCTTCAGC 23650 >seq127 Length=492635 Score = 123 bits (136), Expect = 3e-23 Identities = 85/95 (89%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 404216 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 404275 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||| |||||| || || Sbjct 404276 GTGGGTTCGAACCCCACACCTGGCAAATTTTTCTT 404310 >seq52 Length=1010276 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 831240 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 831299 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 831300 GTGGGTTCGAACCCCACACCTGACA 831324 >seq51 Length=1018889 Score = 122 bits (134), Expect = 1e-22 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 197809 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 197750 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 197749 TGGGTTCGAACCCCACACCTGACA 197726 >seq189 Length=266996 Score = 114 bits (126), Expect = 1e-20 Identities = 75/82 (91%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTG 126325 ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| Sbjct 226001 CAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCGTG 226060 Query 126326 GGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| || Sbjct 226061 GGTTCGAACCCCACACCTGGCA 226082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556758511631800