Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq44 145 2e-29 seq10 141 2e-28 seq39 125 2e-23 seq6 95.1 3e-14 >seq44 Length=1094211 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | || | || ||| ||||||||||| ||||||| Sbjct 805568 CCACCACGGAGGCGAAGCACCAAGTGGAGGGTTGATTCCTTTTGGATATTGTAGTCGGAC 805509 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || |||||||| || || ||||||||||| |||||| |||||| Sbjct 805508 AGTGTACGACCATCCTCCAATTGTTTACCAGCAAAGATCAGACGTTGTTGA---TCTGGG 805452 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||||||||| || || || ||||| || ||||| |||| ||| | ||| Sbjct 805451 GGAATACCTTCTTTATCTTGAATCTTTGCTTTGACATTTTCAATAGTATCAGAGGGTTCG 805392 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 805391 ACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTCTTTACGAAAATTTGCAT 805342 >seq10 Length=2329298 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 ||| || || ||||||| || |||||||||||||| || |||| ||| || || || Sbjct 1253182 TCTCAGCACAAGATGAAGGGTAGACTCTTTTTGGATATTGTAATCGGAGAGTGTACGACC 1253123 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 || || || |||||||| || ||||| |||||||||||| ||| || || ||||| Sbjct 1253122 ATCCTCCAACTGTTTTCCAGCAAAGATAAGACGCTGTTGATCTGGTGGAATGCCCTCTTT 1253063 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 || || ||||| |||||||| || || || | ||| | ||| ||||| | ||||| Sbjct 1253062 GTCTTGAATTTTAGCTTTCACATTCTCAATTGTATCAGAGGGTTCAACTTCCAAGGTGAT 1253003 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| || || ||||| || ||||| || ||||| Sbjct 1253002 CGTCTTGCCAGTAAGAGTTTTCACGAAAATTTGCAT 1252967 Score = 136 bits (150), Expect = 9e-27 Identities = 172/235 (73%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| || |||||||| || ||||| | || || || ||||| ||||| || Sbjct 1255249 ATTTCCACCTCGAAGTCTAAGGACAAGATGCAAGGTTGACTCCTTCTGGATGTTATAATC 1255190 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 || || ||||| || || || | |||||| || || || |||| ||| || ||| || Sbjct 1255189 GGACAGAGTGCGGCCATCCTCGAGTTGTTTACCGGCAAAAATCAAACGTTGCTGA---TC 1255133 Query 288363 TGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 ||| |||||||| |||||||||||||| || || || ||||| || | ||| | Sbjct 1255132 TGGAGGAATTCCTTCCTTATCCTGGATTTTAGCCTTGACATTTTCAATGGTATCAGAAGG 1255073 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| ||||| | |||||||| || || |||| ||||| || || ||||||||| Sbjct 1255072 TTCAACTTCCAAAGTGATCGTTTTACCCGTCAAGGTCTTCACAAAAATCTGCATT 1255018 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || | ||| | ||| ||| || || || |||||||||| | Sbjct 1253421 CCTCCGCGAAGACGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATGTTATAGTCGGAG 1253362 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||||| || || || |||| |||||||||| ||||| Sbjct 1253361 AGAGTACGACCATCCTCAAGCTGTTTACCAGCAAAAATCAAACGCTGTTGA---TCTGGA 1253305 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||||||||| |||||||| |||||||| ||||| || | ||| | || Sbjct 1253304 GGAATACCTTCTTTATCTTGGATTTTGGCTTTCACATTTTCAATTGTATCAGAAGGCTCA 1253245 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || ||||| ||||| || || || || |||||||| Sbjct 1253244 ACTTCTAATGTAATTGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 1253195 Score = 120 bits (132), Expect = 7e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || ||||||| || || |||||||| || || |||| Sbjct 1253878 TCCACCACGTAGACGCAGAACTAGATGAAGTGTTGACTCCTTTTGGATGTTGTAATCGGA 1253819 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || ||||| || || || || || ||||||| || || ||| ||| Sbjct 1253818 CAAAGTGCGACCATCTTCCAACTGCTTACCGGCAAAGATCAATCGTTGCTGATCTGGTGG 1253759 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| ||||||||||| || || || || || || | ||| | ||| || Sbjct 1253758 AATACCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATCGTATCTGATGGTTCAAC 1253699 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || || ||||| ||||||| |||||| ||||| ||||||||| Sbjct 1253698 CTCCAATGTAATTGTCTTACCGGTCAAAGTCTTAACGAAAATCTGCATT 1253650 Score = 116 bits (128), Expect = 9e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || ||||| | || || |||||||| || || |||| Sbjct 1254106 TCCACCACGTAGACGCAGAACCAGATGGAGAGTTGACTCCTTTTGGATGTTGTAATCGGA 1254047 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || || ||||||||||| || || ||||| || || || ||| ||| Sbjct 1254046 CAAAGTGCGACCATCCTCTAATTGTTTACCGGCAAAGATGAGTCGTTGCTGATCCGGTGG 1253987 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || ||||| ||||| || ||||| || || || || | |||| | || || Sbjct 1253986 GATACCCTCCTTATCTTGGATCTTAGCTTTAACATTCTCAATGGTATCGGATGGCTCGAC 1253927 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| || || || |||| ||||| || || ||||||||| Sbjct 1253926 TTCCAGAGTGATAGTTTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 1253878 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||| ||||| | || | ||| || || || || |||||||||| Sbjct 1254789 CCTCCACGAAGTCTCAGTACCAAGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCGGAA 1254730 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || |||||||||||||| ||||| || || || || || | | ||| || ||| Sbjct 1254729 AGTGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATTAATCTCTGCTG---GTCTGGG 1254673 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| |||||||| || || || ||||| ||||| |||| || | ||| Sbjct 1254672 GGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACATTTTCAATAGTGTCAGAAGGTTCA 1254613 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || ||||| || || |||| ||||| || || |||||||| Sbjct 1254612 ACTTCCAAAGTAATCGTTTTGCCAGTCAACGTCTTAACAAAAATCTGCAT 1254563 Score = 104 bits (114), Expect = 6e-17 Identities = 143/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || ||||| || | |||||||| || ||||||| ||||| || || ||| Sbjct 1252929 TCCTTTTGAATGTTATAATCAGACAGCGTGCGACCATCTTCTAGCTGTTTGCCAGCAAAG 1252870 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | || || ||||| ||||| ||||||||||| || || || || ||| Sbjct 1252869 ATCAATCTTTGCTGG---TCTGGAGGAATTCCCTCTTTATCCTGAATCTTAGCCTTAACG 1252813 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| | || ||||| | ||||| || || || || || ||||| Sbjct 1252812 TTTTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATAGTTTTGCCTGTTAGTGTCTTC 1252753 Query 288460 ACGAATATCTGCATTATGT 288478 || || ||||||||| ||| Sbjct 1252752 ACAAAGATCTGCATTTTGT 1252734 >seq39 Length=1160777 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| || ||||| || || || | ||||| || ||||| Sbjct 535113 TCCTTCTGGATGTTGTAATCGGAAAGTGTGCGACCATCCTCAAGCTGTTTACCGGCGAAA 535054 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||||||||||||| |||| |||||||| || || |||||||| |||||||| || Sbjct 535053 ATCAGACGCTGTTG---ATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTCGCTTTGACA 534997 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || | || || || || ||||| ||||| ||||| || || || Sbjct 534996 TTTTCAATAGTGTCTGAGGGCTCGACCTCAAGAGTGATGGTCTTACCGGTTAGGGTTTTT 534937 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 534936 ACGAAGATCTGCAT 534923 >seq6 Length=2768319 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 72681 CTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATG 72740 || |||||| |||| | ||| | |||||||| |||| || ||||| ||||||||| Sbjct 1228650 CTGGGTAATTTAGACTCTAAACGGGATTGGGGTCATGCTCGTGACTACGTTGAAGCAATG 1228709 Query 72741 TGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACAACG 72800 ||| ||||| ||||||||||||| || | || ||||| || ||||| ||| | ||| Sbjct 1228710 TGGATGATGTTGCAACAAGATACACCAAAGGATTATGTTATAGCAACTGGGGAGACACAC 1228769 Query 72801 AGCGTTCGTGAGTTCGT 72817 || ||||| || || || Sbjct 1228770 AGTGTTCGGGAATTTGT 1228786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179432295038210