Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq10 143 2e-29 seq39 91.5 1e-13 seq22 84.2 2e-11 >seq10 Length=2329298 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 || ||||| | ||| ||||| || || | ||||| |||||||| ||||| || || | Sbjct 2323996 TTATAATCAAACTGAGTTTGAGCACCTAATTCGCAACCGAAGTATTTTGTTGGATATGTT 2323937 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || || |||| ||||| || | ||| | |||||| || || ||||| || |||||| Sbjct 2323936 GCTGGTCGGCCAATGGCCTTAGCAACTTCAGCCATGTTAACAATAACAGTTTTAATGCCG 2323877 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || ||||| ||||| |||||||| || || ||||||||||| |||||||| | || Sbjct 2323876 TTACCCTTGCCTTCTACCTTGGCATTAATACGGGGCATTTTGTACCGGTAGAAAACATCG 2323817 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 | ||||| || ||||| || ||||| | ||| Sbjct 2323816 GTAACATTACGATTAACATTGACAGTACTCAT 2323785 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || |||||||| || || ||||| ||| | ||| ||||| Sbjct 1254335 ATGCAAATTTTTGTAAAGACTTTAACTGGGAAGACCATCACCTTGGAAGTCGAGCCCTCT 1254394 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | ||||| |||||| |||||||||||| | || ||||| Sbjct 1254395 GACACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAG 1254454 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| ||| |||||||| ||||||||| | ||| | | || ||||| Sbjct 1254455 CAACGTTTGATTTTTGCTGGTAAACAATTGGAGGATGGGCGCACATTATCTGACTACAAT 1254514 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499 || || ||||| || || | ||| ||||| | | |||||||| || Sbjct 1254515 ATCCAGAAAGAGTCGACCCTTCACTTGGTGCTTCGCCTGCGAGGAGG 1254561 >seq39 Length=1160777 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| ||||||| || ||||| || | || ||||| Sbjct 534920 AACATGCAGATCTTCGTAAAAACCCTAACCGGTAAGACCATCACTCTTGAGGTCGAGCCC 534979 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | || ||| |||||| ||||| || || | ||| ||| Sbjct 534980 TCAGACACTATTGAAAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGAT 535039 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| | || |||| || ||||||||||| ||||||| | ||| | | |||||| Sbjct 535040 CAACAGCGTCTGATTTTCGCCGGTAAACAGCTTGAGGATGGTCGCACACTTTCCGATTAC 535099 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499 ||||| || || || ||||| ||||| ||||| | | || ||||| || Sbjct 535100 AACATCCAGAAGGAGTCTACCCTGCACTTGGTGCTCCGTCTCCGAGGTGG 535149 >seq22 Length=1532643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 || || ||||| || || ||||||||||| || || | || || |||||||| || ||| Sbjct 643221 GGCCTCCACGGTTTTCATGTGCACGAATTCGGTGATAACACAAATGGCTGTACCTCTGCC 643162 Query 107231 GGTGAACACTTCAATCC---CACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGG 107287 |||| ||||||||||| || | ||| ||||| || || ||| | ||||| Sbjct 643161 GGTGCCCACTTCAATCCGTGCAAGAAGCAA---CACGGAGCCCCGGACAGTGCCGAAAGA 643105 Query 107288 CACGTCGGCGATCTGGGCAACGT 107310 || || || |||||||||||||| Sbjct 643104 CATGTTGGAGATCTGGGCAACGT 643082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412767662004635