Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3509 127 2e-24 seq3563 122 7e-23 seq106 116 3e-21 seq170 100 2e-16 >seq3509 Length=1415 Score = 127 bits (140), Expect = 2e-24 Identities = 223/325 (69%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 ||| || || || || ||| ||||||||| ||| | | | |||||| | || || Sbjct 1363 CCGCCGAATCATCATGACCGCCTGGAACCCAGTCGACATCCCTCAGATGGCTCTTCCGCC 1304 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 ||| |||| | ||||| || ||| || || || || || || || | ||||| Sbjct 1303 TTGCCATTGCCTCGTCCAGTTCTATGTTGCAAACGGAGAGCTATCGTGCCAGCTCTATCA 1244 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 || || | ||||||||||| |||||||| |||||||| || || || || || || || Sbjct 1243 GAGGTCTGCCGACATGGGACTGGGGGTCCCTTTTAACATCGCCAGCTACGCCCTTCTTAC 1184 Query 41183 GTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGA 41242 || ||| |||| ||||| || || || ||||| || ||||| || || || ||||| Sbjct 1183 TTACATGGTTGCTCACGTCACAGGCTTGAAGCCTGGAGATTTTGTCCATACCTTTGGAGA 1124 Query 41243 TGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAG 41302 || ||| | || | |||||||| || ||||| ||| || || | | || || || Sbjct 1123 TGCTCATGTATATCTGAATCACATTGAACCGTTGCAAGAGCAGCTTAAAAGAGTTCCGAG 1064 Query 41303 ACCATTTCCAACGCTACTTATTAAA 41327 || ||||| | || | |||||| Sbjct 1063 GCCTTTTCCGAAACTGATCATTAAA 1039 >seq3563 Length=1406 Score = 122 bits (134), Expect = 7e-23 Identities = 222/325 (68%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 ||| || || || || ||| ||||||||| ||| | | | |||||| | || || Sbjct 53 CCGCCGAATCATCATGACCGCCTGGAACCCAGTCGACATCCCTCAGATGGCTCTTCCGCC 112 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 ||| || | | ||||| || ||| || || || || || || || | ||||| Sbjct 113 TTGCCACTGCCTCGTCCAGTTCTATGTTGCAAACGGAGAGCTATCGTGCCAGCTCTATCA 172 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 || || | ||||||||||| |||||||| |||||||| || || || || || || || Sbjct 173 GAGGTCTGCCGACATGGGACTGGGGGTCCCTTTTAACATCGCCAGCTACGCCCTTCTTAC 232 Query 41183 GTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGA 41242 || ||| |||| ||||| || || || ||||| || ||||| || || || ||||| Sbjct 233 TTACATGGTTGCTCACGTCACAGGCTTGAAGCCTGGAGATTTTGTCCATACCTTTGGAGA 292 Query 41243 TGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAG 41302 || ||| | || | |||||||| || ||||| ||| || || | | || || || Sbjct 293 TGCTCATGTATATCTGAATCACATTGAACCGTTGCAAGAGCAGCTTAAAAGAGTTCCGAG 352 Query 41303 ACCATTTCCAACGCTACTTATTAAA 41327 || ||||| | || | |||||| Sbjct 353 GCCTTTTCCGAAACTGATCATTAAA 377 >seq106 Length=643652 Score = 116 bits (128), Expect = 3e-21 Identities = 187/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTG-- 19606 ||||||||||| ||| | ||||| | || || || || ||| ||||||||||| || Sbjct 406350 TTGCACATTATTATATTCGATGAGATCGATGCTATTTGCAAGGCAAGAGGTTCTGTTGCT 406291 Query 19607 ----TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | |||||| || || ||||| || || || ||||| | ||| | || |||||| Sbjct 406290 GGCAACAGTGGAGTTCACGATACTGTAGTTAACCAGCTCCTTGCTAAAATTGATGGTGTT 406231 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || | || ||||| || |||||||| ||||| ||||| ||| | || || Sbjct 406230 GAGCAGTTAAACAATATCTTGGTTATTGGTATGACCAATAGGAGGGATATGATTGATGAG 406171 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | ||||||| || | |||||| || | || |||||| ||||| ||||| | Sbjct 406170 GCTCTTCTACGACCTGGCAGATTGGAAGTACAAATGGAAATTGGTTTACCGAATGAAGCT 406111 Query 19783 GGACGTGTGGAAATTTTAAACATACATAC 19811 ||||| | |||| |||||||| || || Sbjct 406110 GGACGACAGCAAATCTTAAACATTCACAC 406082 >seq170 Length=322284 Score = 100 bits (110), Expect = 2e-16 Identities = 276/415 (67%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 || || || || ||||| |||| || | ||||| | || || ||||||||| | || Sbjct 23998 TTCAACGCAATTGAAACCTTACCCTGTG-TTAAAAAGAAGGCTGACTGGGCCATGGCTTG 24056 Query 44101 GATAA-ATTCAAATGA--TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 |||| | ||| | | | ||| || ||| || | | || ||||| | || || || Sbjct 24057 GATATCAAGCAAGTCAGCTAATTTCGGTGAAAGAATAATTGCTTTTGCTGCAGTCGAGGG 24116 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 || ||||| || ||||| | || || ||| | ||||| | || | ||||| Sbjct 24117 AATCTTCTTCAGTGGCAGTTTTGCATCAATTTTCTGGCTCAAGAAGAGGGGCATTATGCC 24176 Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 ||| |||| ||||| || || | ||| ||||| ||||||||||||||||||||||| Sbjct 24177 TGGTCTGACTTTTTCCAACGAACTTATATCCCGTGACGAAGGCTTACATTGCGATTTTGC 24236 Query 44278 TTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATAT 44337 ||| || | | | |||| | | | ||||| | | ||||| || || Sbjct 24237 TTGTTTAATGTTCAAACATCTTGTA---CAGAAGCCCAGCAGGGATCGAATTATCGAGAT 24293 Query 44338 TGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTT 44397 | |||||||||||| || ||||| ||||| |||| || ||||||||||| | Sbjct 24294 AATCTCAGAGGCAGTAAAAATTGAACAGCAATTTTTGACCGACGCCCTACCTGTAAATCT 24353 Query 44398 AATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451 || || ||||| || | | |||||| ||| || || || | | | ||||| || Sbjct 24354 TATTGGGATGAACTGCA-TGTTGATGTGCCAGTACATCGAGTTCGTCGCAGACCG 24407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || || ||||| |||||| || || ||||||||| | || || || || Sbjct 23755 GCTTTCTTCGCTGCCTCCGACGGAATTGTAAATGAAAATCTCGTGGAGCGTTTCAGCCAG 23814 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || ||| | || ||||| || | ||| || || || |||||||||||||||||| | Sbjct 23815 GAGGTGCAAATCCCGGAAGCTCGCTTTTTCTACGGCTTCCAAATTGCCATAGAAAATGTC 23874 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG 44021 || ||||||||||||||| || | || || || || || || |||| Sbjct 23875 CACTCGGAAATGTACAGTATTTTAATCGACACTTATATTAAGGATG 23920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397384817493475