Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq39 141 6e-29 seq10 122 5e-23 >seq39 Length=1160777 Score = 141 bits (156), Expect = 6e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||||| || || || |||||| || ||||| ||||| ||| Sbjct 535149 CCACCTCGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAATCGGAA 535090 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || ||||| ||||||||||| || || | ||||||||| || || || Sbjct 535089 AGTGTGCGACCATCCTCAAGCTGTTTACCGGCGAAAATCAGACGCTGTTGATCTGGGGGG 535030 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||||||| |||||| ||| | | ||| |||||| | ||| || Sbjct 535029 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTTTCAATAGTGTCTGAGGGCTCGACC 534970 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || | || || || |||||||||| ||||| || || ||||||||||| || Sbjct 534969 TCAAGAGTGATGGTCTTACCGGTTAGGGTTTTTACGAAGATCTGCATGTTTAT 534917 >seq10 Length=2329298 Score = 122 bits (134), Expect = 5e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | || ||||| ||||||||| |||||| ||||||||||| || ||| Sbjct 1254789 CCTCCACGAAGTCTCAGTACCAAGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCGGAA 1254730 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||| | ||| || || ||||| ||||| | ||| ||||| || || Sbjct 1254729 AGTGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATTAATCTCTGCTGGTCTGGGGGG 1254670 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||| || ||||| || | | ||| ||||| || ||| Sbjct 1254669 ATGCCTTCCTTATCCTGAATCTTAGCCTTCACATTTTCAATAGTGTCAGAAGGTTCAACT 1254610 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || |||||||| || || ||||| || |||||||||||||| Sbjct 1254609 TCCAAAGTAATCGTTTTGCCAGTCAACGTCTTAACAAAAATCTGCAT 1254563 Score = 118 bits (130), Expect = 7e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || || ||||||||||||||||||||| || Sbjct 1252965 CCTCCACGAAGACGAAGGACCAAATGTAGGGTCGACTCCTTTTGAATGTTATAATCAGAC 1252906 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| || ||||| || || | || ||||| || || Sbjct 1252905 AGCGTGCGACCATCTTCTAGCTGTTTGCCAGCAAAGATCAATCTTTGCTGGTCTGGAGGA 1252846 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| || || ||| || | |||||| | ||| || || ||| || Sbjct 1252845 ATTCCCTCTTTATC-CTGAATCTTAGCCTTAACGTTTTCAATGGTATCAGAAGGCTCAAC 1252787 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| ||| || ||||| || |||| || |||||||| |||||||| ||| Sbjct 1252786 TTCCAAGGTGATAGTTTTGCCTGTTAGTGTCTTCACAAAGATCTGCATTTTG 1252735 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || ||||| |||||| ||||| ||||||||||| || || Sbjct 1253421 CCTCCGCGAAGACGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATGTTATAGTCGGAG 1253362 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| |||||||| ||||| || ||||||||||| || || || Sbjct 1253361 AGAGTACGACCATCCTCAAGCTGTTTACCAGCAAAAATCAAACGCTGTTGATCTGGAGGA 1253302 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| ||| | ||| || | |||||| || ||| || Sbjct 1253301 ATACCTTCTTTATCTTGGAT-TTTGGCTTTCACATTTTCAATTGTATCAGAAGGCTCAAC 1253243 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || | ||||| |||||||||||||| Sbjct 1253242 TTCTAATGTAATTGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 1253195 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| ||||||||| ||||||||| ||||| ||||| || | || || Sbjct 1254096 AGACGCAGAACCAGATGGAGAGTTGACTCCTTTTGGATGTTGTAATCGGACAAAGTGCGA 1254037 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | ||||||||||||||| || | || || || ||||| || | |||||| Sbjct 1254036 CCATCCTCTAATTGTTTACCGGCAAAGATGAGTCGTTGCTGATCCGGTGGGATACCCTCC 1253977 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| || | |||||| | ||| || || ||| ||||||| || Sbjct 1253976 TTATCTTGGATC-TTAGCTTTAACATTCTCAATGGTATCGGATGGCTCGACTTCCAGAGT 1253918 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || || || ||||| |||||||| Sbjct 1253917 GATAGTTTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 1253879 Score = 109 bits (120), Expect = 3e-19 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||||||| ||||| || |||||||| || || | || || ||||||| Sbjct 1254999 ACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAGTCGGACAAAGTGCGACCGTCTTCC 1254940 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| ||||| ||||| || | ||| ||||| || || || | || || ||||| || Sbjct 1254939 AATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATCCCTTCTTTGTC-CTG 1254881 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTT 34675 | || | |||||| | |||||||||| || | || || |||| || || |||| Sbjct 1254880 AATCTTGGCCTTAACGTTCTCAATTGTGTCTGACGGT-TCAACCTCCAAAGTGATAGTTT 1254822 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||||||| || ||||| || || ||||| Sbjct 1254821 TGCCGGTTAAAGTCTTCACGAAGATTTGCAT 1254791 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| ||| |||||| ||||| |||||||| || | || || Sbjct 1253640 AGACGTAGTACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCAGATAAGGTACGG 1253581 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | |||||| || ||||| || | || || || || || || | ||| ||| Sbjct 1253580 CCATCCTCCAATTGTTTCCCAGCAAAGATGAGTCGTTGCTGATCTGGAGGAATTCCTTCC 1253521 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || ||| |||||| || | | ||| ||||| || ||||||| || Sbjct 1253520 TTATCTTGAATCTTTGCCTTCACATTTTCAATAGTGTCAGAAGGTTCAACTTCCAATGTG 1253461 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||| || || | |||||||| ||||||||||| Sbjct 1253460 ATCGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 1253423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314673233403935