Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq10 111 1e-19 >seq10 Length=2329298 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 |||||| ||||| || || ||| | || || || |||||| | || || ||| | | Sbjct 1253650 AATGCAGATTTTCGTTAAGACTTTGACCGGTAAGACAATTACATTGGAGGTTGAACCATC 1253709 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| || || ||||| |||||||||||| |||| || Sbjct 1253710 AGATACGATCGAGAAT--GTTAAGGCTAAAATCCAGGACAAAGAAGGTATTCCACCAGAT 1253767 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || || |||||||| || || ||||| || | |||| |||||||||||| Sbjct 1253768 CAGCAACGATTGATCTTTGCCGGTAAGCAGTTGGAAGATGGTCGCACTTTGTCCGATTAC 1253827 Query 27967 AACATCCAAAAAGAG--AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||| | ||||| ||| | ||| ||||| | ||||| || Sbjct 1253828 AACATCCAAAAGGAGTCAACACTT--CATCTAGTTCTGCGTCTACGTGGTGG 1253877 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| || || | ||||| ||| ||| || | || ||||| | Sbjct 1253878 AATGCAGATCTTTGTAAAGACATTGACTGGCAAAACTATCACTCTGGAAGTCGAGCCATC 1253937 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || ||| || || || || || ||| | || ||| Sbjct 1253938 CGATACCATTGAGAAT--GTTAAAGCTAAGATCCAAGATAAGGAGGGTATCCCACCGGAT 1253995 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| | || |||||||| |||||||| || || | |||| |||||||||||| Sbjct 1253996 CAGCAACGACTCATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACTTTGTCCGATTAC 1254055 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||| ||| | ||| ||||| ||||| | ||||| || Sbjct 1254056 AACATCCAAAAGGAGTCAACTCTCCATCTGGTTCTGCGTCTACGTGGTGG 1254105 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||||||||||||||| || || || | || || ||| | | Sbjct 1252967 ATGCAAATTTTCGTGAAAACTCTTACTGGCAAGACGATCACCTTGGAAGTTGAACCCTCT 1253026 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| |||||||| || |||| || | Sbjct 1253027 GATACAATTGAGAAT--GTGAAAGCTAAAATTCAAGACAAAGAGGGCATTCCACCAGATC 1253084 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| |||||||| ||||| || | || | | |||||||||| Sbjct 1253085 AACAGCGTCTTATCTTTGCTGGAAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACA 1253144 Query 27968 ACATCCAAAAAGAG 27981 | |||||||||||| Sbjct 1253145 ATATCCAAAAAGAG 1253158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355798666712265