Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3563 214 1e-50 seq3509 212 5e-50 >seq3563 Length=1406 Score = 214 bits (236), Expect = 1e-50 Identities = 271/365 (74%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 29570 AAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29629 ||||| || | |||||||| |||| || || ||||| | ||||| || || || | Sbjct 403 AAGTCCTCTATATTCTCCACCTTCCTTTTAATGATCAGTTTCGGAAAAGGCCTCGGAACT 344 Query 29630 CTCTCGAGCTGAATCCT-CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAG 29688 || | ||||| || | || |||||| | ||| | || || || ||||||||||| | Sbjct 343 CTTTTAAGCTGC-TCTTGCAACGGTTCAATGTGATTCAGATATACATGAGCATCTCCAAA 285 Query 29689 GGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747 ||| |||||||| ||||| || ||| |||| | |||||||||| | |||||| || || | Sbjct 284 GGTATGGACAAAATCTCCAGGCTTCAAGCCTG-TGACGTGAGCAACCATGTAAGTAAGAA 226 Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807 | | |||||||||||||||||| || ||||| || |||||||| | |||||||| |||| Sbjct 225 GGGCGTAGCTGGCGATGTTAAAAGGGACCCCCAGTCCCATGTCGGCAGACCTCTGATAGA 166 Query 29808 GCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCA-TGGCACGGAGGA 29866 |||||||||| |||||||||| || || ||||| || |||| ||||| || ||| Sbjct 165 GCTGGCACGATAGCTCTCCGTTTGCAACATAGAACTG-GACGAGGCAGTGGCAAGGCGGA 107 Query 29867 AGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCT 29926 || ||||| || | ||| ||||||||||| || |||||| || | ||| | Sbjct 106 AGAGCCATCTGAGGGATGTCGACTGGGTTCCAGGCGGTCATGATGATTCGGCGGTCGTTA 47 Query 29927 GGGTT 29931 ||||| Sbjct 46 GGGTT 42 >seq3509 Length=1415 Score = 212 bits (234), Expect = 5e-50 Identities = 263/352 (75%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 29583 TCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAA 29642 |||||||| |||| || || ||||| | ||||| || || || | || | ||||| Sbjct 1026 TCTCCACCTTCCTTTTAATGATCAGTTTCGGAAAAGGCCTCGGAACTCTTTTAAGCTGC- 1084 Query 29643 TCCT-CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAAC 29701 || | || |||||| | ||| | || || || ||||||||||| | ||| |||||||| Sbjct 1085 TCTTGCAACGGTTCAATGTGATTCAGATATACATGAGCATCTCCAAAGGTATGGACAAAA 1144 Query 29702 TCTCCCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGC 29760 ||||| || ||| || || ||||||||||| | |||||| || || || | ||||||||| Sbjct 1145 TCTCCAGGCTTCAAG-CCTGTGACGTGAGCAACCATGTAAGTAAGAAGGGCGTAGCTGGC 1203 Query 29761 GATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAG 29820 ||||||||| || ||||| || |||||||| | |||||||| |||||||||||||| || Sbjct 1204 GATGTTAAAAGGGACCCCCAGTCCCATGTCGGCAGACCTCTGATAGAGCTGGCACGATAG 1263 Query 29821 CTCTCCGTCGCTCACGTAAAACTGACACATGGC-ATGGCACGGAGGAAGGGCCATGAGAC 29879 |||||||| || || ||||| || ||| |||||| || ||||| ||||| || Sbjct 1264 CTCTCCGTTTGCAACATAGAACTG-GACGAGGCAATGGCAAGGCGGAAGAGCCATCTGAG 1322 Query 29880 CCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931 | ||| ||||||||||| || |||||| || | ||| | ||||| Sbjct 1323 GGATGTCGACTGGGTTCCAGGCGGTCATGATGATTCGGCGGTCGTTAGGGTT 1374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406090458074770