Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq39 129 5e-25 seq10 105 6e-18 >seq39 Length=1160777 Score = 129 bits (142), Expect = 5e-25 Identities = 173/237 (73%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| || ||||||||| ||||| || ||||| Sbjct 535149 CCACCTCGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAATCGGAA 535090 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||| || |||||||| ||||| |||||||| || | ||| Sbjct 535089 AGTGTGCGACCATCCTCAAGCTGTTTACCGGCGAAAATCAGACGCTGTTGATCTGGGGGG 535030 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || |||| || || |||||| | ||| || Sbjct 535029 ATTCCCTCCTTGTCCTGGATCTTC-GCTTTGACATTTTCAATAGTGTCTGAGGGCTCGAC 534971 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG-TTATCGA 41870 ||| | || || || ||||| || || || |||||||| ||||||||| ||||||| Sbjct 534970 CTCAAGAGTGATGGTCTTACCGGTTAGGGTTTTTACGAAGATCTGCATGTTTATCGA 534914 >seq10 Length=2329298 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||| |||||||||||||||||||||||| || ||||| |||| || Sbjct 1254771 ACCAAGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCGGAAAGTGTGCGTCCGTCTTCC 1254712 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||||| || || || | | ||| ||||| | ||| | || ||||| ||| || Sbjct 1254711 AATTGCTTGCCAGCAAAAATTAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCC-TG 1254653 Query 41774 ATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || | ||||| | |||||| | || || |||| || |||||||| Sbjct 1254652 AATCTTAGCCTTCACATTTTCAATAGTGTCAGAAGGTTCAACTTCCAAAGTAATCGTTTT 1254593 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| |||||| || ||||||||||| Sbjct 1254592 GCCAGTCAACGTCTTAACAAAAATCTGCAT 1254563 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||||| || | ||| || ||| |||||||||||||||||||||||| Sbjct 1253421 CCTCCGCGAAGACGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATGTTATAGTCGGAG 1253362 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||| || || || || |||| |||||||| || | ||| Sbjct 1253361 AGAGTACGACCATCCTCAAGCTGTTTACCAGCAAAAATCAAACGCTGTTGATCTGGAGGA 1253302 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || ||| | || |||| |||| || | | || || | ||| || Sbjct 1253301 ATAC-CTTCTTTATCTTGGATTTTGGCTTTCACATTTTCAATTGTATCAGAAGGCTCAAC 1253243 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || ||||| || ||||| ||||||||||| Sbjct 1253242 TTCTAATGTAATTGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 1253195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| ||| || ||| |||||||| |||||||||||||| Sbjct 1255017 CCACCACGGAGGCGAAGTACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAGTCGGAC 1254958 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| || | ||||| || || || || || || ||||| || | ||| Sbjct 1254957 AAAGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGA 1254898 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| | || || | |||| | | ||||| || || || Sbjct 1254897 ATCCCTTCTTTGTCC-TGAATCTTGGCCTTAACGTTCTCAATTGTGTCTGACGGTTCAAC 1254839 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 1254838 CTCCAAAGTGATAGTTTTGCCGGTTAAAGTCTTCACGAAGATTTGCAT 1254791 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || |||||| ||||||||||| || || Sbjct 1252965 CCTCCACGAAGACGAAGGACCAAATGTAGGGTCGACTCCTTTTGAATGTTATAATCAGAC 1252906 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||| ||||| || || |||| | || ||||| | ||| Sbjct 1252905 AGCGTGCGACCATCTTCTAGCTGTTTGCCAGCAAAGATCAATCTTTGCTGGTCTGGAGGA 1252846 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| || ||| ||| | || || | |||| | | || || | ||| || Sbjct 1252845 ATTCCCTCTTTATCC-TGAATCTTAGCCTTAACGTTTTCAATGGTATCAGAAGGCTCAAC 1252787 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || || ||||| || || || ||||| || || |||||||| || Sbjct 1252786 TTCCAAGGTGATAGTTTTGCCTGTTAGTGTCTTCACAAAGATCTGCATTTT 1252736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462219080534000