Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq47140 131 2e-25 seq24804 113 5e-20 seq15818 96.9 4e-15 >seq47140 Length=38879 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| ||| || |||||||| | || |||||||||||| || |||| || || || | Sbjct 14420 GGTCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAG 14361 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTT 17345 || ||||||||||| ||| |||||||||| | ||||| || || |||| |||| Sbjct 14360 TGATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTT 14301 Query 17346 CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAA 17405 | ||| ||| || || ||||| || ||| ||| |||||||||||||||| ||| || Sbjct 14300 CGACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAA 14241 Query 17406 TGAAATATTTTTCGTCCGGT 17425 |||| | ||||| || ||| Sbjct 14240 TGAACTTCTTTTCTTCTGGT 14221 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16764 ATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGC 16823 ||| ||||| | | || |||| | | ||||||||| ||||||||||| ||||| Sbjct 15020 ATACTTTAGGACAACTCAATTCGACCAATAATCTATCGGCTACAAATTCAATATAGGTCT 14961 Query 16824 ACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTT 16883 ||||||||| | ||||||||| || | ||| |||||||| || ||||||||| || Sbjct 14960 TCATTAATTCACTGTTCATTCCAATCATCGATACTGGAAGAGCATCGGTCAAAAATTCTT 14901 Query 16884 GCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTT 16943 | || |||| ||| || || |||||| | || | ||| || || | || | Sbjct 14900 GTTCGATAATAACAGCGTCACGAATAATTTCGGTAATTTCTTCAACGCTGGGCTTTTGAT 14841 Query 16944 TAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCT 16988 | | |||||| ||||| || || || || ||| |||||| |||| Sbjct 14840 TCAAATGTTTGAACATGAGGCAAGCAAAGTCGGTATGTAAACCCT 14796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 |||||||| || | ||| ||| || ||||| || ||||| |||| ||||| Sbjct 14729 TCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTG 14670 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107 | |||||||||||| || || || |||||||| || || ||||| | ||||||||| Sbjct 14669 AGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACGCT 14610 Query 17108 ATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCT 17167 |||| | ||| | | || |||| || || | |||||| || |||| || ||| Sbjct 14609 ATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTGCT 14550 Query 17168 TTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 ||| ||| | |||| ||| ||||| || || || |||| Sbjct 14549 TTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATA 14510 >seq24804 Length=9356 Score = 113 bits (124), Expect = 5e-20 Identities = 160/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 16988 TCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||| ||||| ||||| ||| || ||||| || ||||| ||||| || | Sbjct 6999 TCGTCTCT--TGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 6942 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||||||||| ||||| || ||||||||||| ||||| ||||| | |||||||| Sbjct 6941 TGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACG 6882 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 | || | || ||| | | || |||| || | | |||||||||| | |||| || | Sbjct 6881 CTATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTG 6822 Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA 17208 |||| ||| | ||| ||| ||||| || || || ||||| Sbjct 6821 CTTTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATAA 6779 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 || || ||||| | || || |||||||| || |||| ||||| || | || |||||| Sbjct 6683 TAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTGAAAT 6624 Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356 ||||| || ||| |||||| | ||||||||||| |||| ||||| |||||||| Sbjct 6623 CCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAGATTT 6564 Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTT 17416 || || ||||| || || || |||||||| || || | || ||| || | ||| Sbjct 6563 TCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAATAAATTTCTTT 6504 Query 17417 TCGTCCGGTGTAAG 17430 || || ||| |||| Sbjct 6503 TCTTCGGGTTTAAG 6490 >seq15818 Length=31584 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATACA 119919 || || || || || ||||| | ||||||| ||| ||||||||| || || || || | Sbjct 20373 CCAACATAACCATTAGGATCTCTACCATCTAGACT-GTATTTATCATTCAAATAAATCGA 20431 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 || || || ||| ||| || |||| || | |||||| || ||||| ||||| Sbjct 20432 GATCTCCAATGCTTCTTCTGGACTCGTAGTCCACTCTAATATTTTCTTGGCCCAATACAT 20491 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039 || ||| |||| |||||||| |||||| |||||||| ||| || ||||||||||| Sbjct 20492 TCGCAAGAATCCGTGCATTTTGCCTTCAATCACCATTTGCTTTTGGGCTGCGTTCCATAA 20551 Query 120040 GGGATCGTGTGT 120051 |||| || || Sbjct 20552 AAGATCATGAGT 20563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517113080672760