Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq47140 122 9e-23 seq24804 109 6e-19 >seq47140 Length=38879 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16475 TACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAAT 16534 || ||||| |||| ||| ||||||||||| || |||| || || || | || |||||| Sbjct 14409 TAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTGATTTGAAAT 14350 Query 16535 CCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTC 16594 || |||||| |||| || || | |||||||| || | || ||||| | | ||| Sbjct 14349 CCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCGACTAAATTC 14290 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 ||||| |||||||| || || || ||||||||||||| |||| |||||| | ||| Sbjct 14289 TCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATGAACTTCTTT 14230 Query 16655 TCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 || || | | | || | | ||||||| | ||||| Sbjct 14229 TCTTCTGGTTTCAGTTTCTCCCAATCTCTGAAATC 14195 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||||||||| || | ||| || ||||| || || ||||| |||| |||| Sbjct 14731 CTTCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCT 14672 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 | | ||| |||||||| ||||| ||||||||||| || || || |||| |||||| | Sbjct 14671 TGAGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACG 14612 Query 16344 CGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGG 16403 | |||| | ||| | | ||||| | || | | |||||| || | |||| || | Sbjct 14611 CTATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTG 14552 Query 16404 CTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443 ||||| || | ||| ||| ||||| || || || || Sbjct 14551 CTTTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAA 14512 >seq24804 Length=9356 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16475 TACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAAT 16534 || || || |||| |||||| ||||||||||| |||| ||||| || | || |||||| Sbjct 6683 TAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTGAAAT 6624 Query 16535 CCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTC 16594 || ||||| ||| || || | ||||| ||||| | || ||||| | || || Sbjct 6623 CCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAGATTT 6564 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 ||||| |||||||| ||| ||||| ||||| || || | ||| ||| || | ||| Sbjct 6563 TCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAATAAATTTCTTT 6504 Query 16655 TCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 || || | | |||| | | ||||||| | ||||| Sbjct 6503 TCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATC 6469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510987004593240