Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7785 132 4e-26 >seq7785 Length=64017 Score = 132 bits (146), Expect = 4e-26 Identities = 226/327 (69%), Gaps = 8/327 (2%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || || || ||||||| ||||| ||||||||||| ||||| || || |||||| Sbjct 36925 GGTGATCTCGGTCCTGTTTACGGATTCCAATGGAGACATTTCGGAGCTGAGTACAAAGAC 36984 Query 18849 TGTCAATCAAACTATTTACAGCAA----GGAATCGATCAGCTGCAAACTGTTATAGATAC 18904 | || || ||||| || ||| | ||||| || |||| || |||||||| Sbjct 36985 ----ATGCACACCGATTACACGAACAAAGGAGTGGATCAACTACAAAACGTCATAGATAC 37040 Query 18905 AATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATAT 18964 |||| | |||||||| | ||||||| || ||| | ||||| || ||| | Sbjct 37041 CATTAGGAATAACCCAGACTGTAGACGAATAATCTTATGTGCGTGGAACCCTCTAGATTT 37100 Query 18965 CCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGA 19024 || ||||| ||||||| ||||| ||| |||||||||| | ||||||||| Sbjct 37101 ACCTAAAATGGCCTTACCTCCTTGTCATTGCTTAGTACAGTTTTACGCAGTAAACGGTGA 37160 Query 19025 ATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACAT 19084 ||| || |||||| | || ||| | || | |||||||| | || ||||| ||||| || Sbjct 37161 ATTGTCATGCCAAATGTATCAGCGTTCTGCTGATATGGGTTTAGGCGTACCATTCAATAT 37220 Query 19085 TGCTGGATATGCACTTCTTACCTACAT 19111 ||| | || | | || || ||||| Sbjct 37221 CGCTAGTTACTCCTTGCTCACTTACAT 37247 Score = 123 bits (136), Expect = 2e-23 Identities = 209/300 (70%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || || ||| |||| || ||||| ||||||||||||||||| || || |||||| Sbjct 38441 GGTGATCTAGGTCCCGTTTATGGATTCCAATGGAGACATTTTGGAGCCGAGTACAAAGAC 38500 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 || | | || | | |||| ||||||| || ||| || |||||||||||| Sbjct 38501 ATGCACACCGATTACGTGAACAAAGGCGTCGATCAACTAAAAAACGTCATAGATACAATT 38560 Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCC 18968 |||| || ||| | | || ||| || |||| ||||||| || ||| || | Sbjct 38561 AAAAATAATCCAAATAATGAACAAATAATCATATGCACTTGGAACCCTCTAGAT-TCATC 38619 Query 18969 TTAA-TGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027 | || ||| ||||||| ||||| ||| ||||| |||| | |||||||||||| Sbjct 38620 TAAAATGGCCTTACCTCCTTGTCATTGCTTAGCACAGTTCTACGCGGTAAACGGTGAATT 38679 Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087 || || ||||| ||||| | || | |||||||| | ||| |||| || | ||||| Sbjct 38680 GTCGTGTCAAGTGTACCAACGTTCTGCTGATATGGGTTTAGGGATACCTTTTGATATTGC 38739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399178476275565