Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq7785 123 2e-23 >seq7785 Length=64017 Score = 123 bits (136), Expect = 2e-23 Identities = 240/349 (69%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 101748 GATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCA 101807 |||| ||||| ||||| |||||| |||| | | || || ||||| || || ||||| | Sbjct 37267 GATTGGTGACGTGAGCGATCATGTAAGTGAGCAAGGAGTAACTAGCGATATTGAATGGTA 37208 Query 101808 CTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCC-ATCACAG 101866 | ||||| ||||||||||| || | ||||||| ||| || || | | || | || | Sbjct 37207 CGCCTAAACCCATATCAGCAGAACGCTGATACATTTGGCATGACAATTCACCGTTTACTG 37148 Query 101867 ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACA 101926 | ||||| || ||| ||||||||| || || |||||||||| | ||| | Sbjct 37147 -CGTAAAACTGTACTAAGCAATGACAAGGAGGTAAGGCCATTTTAGGTAAATCTAGAGGG 37089 Query 101927 TTCCAAGCACACATTAACATCCTTCTATCTGT-AGGGTTTGTTTTTATAGTATCAATCAA 101985 ||||| ||||| | | || | |||| | || ||||| | | || ||||| || | Sbjct 37088 TTCCACGCACATAAGATTATTCGTCTA-CAGTCTGGGTTATTCCTAATGGTATCTATGAC 37030 Query 101986 CTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGC 102045 | || || ||| || ||||||| | |||||| | |||| || || || Sbjct 37029 GTTTTGTAGTTGATCCACTCCTTTGTTCGTGTAATCGGTGTGCATGTCTTTGTACTCAGC 36970 Query 102046 TCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCA 102094 ||||||||| ||||| || ||||| || ||||| || ||||| ||| || Sbjct 36969 TCCGAAATGTCTCCATTGGAATCCGTAAACAGGACCGAGATCACCTACA 36921 Score = 89.7 bits (98), Expect = 4e-13 Identities = 232/347 (67%), Gaps = 10/347 (3%) Strand=Plus/Minus Query 101750 TTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACT 101809 ||||||| |||||| ||||| |||| | | | || || ||||| | ||| || | Sbjct 38781 TTAGTGATATGAGCGATCATATAAGTGAGCAAGGCGTAACTTGCAATATCAAAAGGTATC 38722 Query 101810 CCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCC-ATCACAGAC 101868 ||||| ||||||||||| || | ||| |||| |||||| || | | || | || | | Sbjct 38721 CCTAAACCCATATCAGCAGAACGTTGGTACACTTGACACGACAATTCACCGTTTACCG-C 38663 Query 101869 ATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAG--GAATGTCTGAAACA 101926 || || || ||| ||||||||| || || ||||||||| ||| ||| | Sbjct 38662 GTAGAACTGTGCTAAGCAATGACAAGGAGGTAAGGCCATTTTAGATGAA--TCTAGAGGG 38605 Query 101927 TTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAAC 101986 ||||||| || || | || | || | || || |||| || ||||| || | Sbjct 38604 TTCCAAGTGCATATGATTATTTGTTCATTATTTGGATTATTTTTAATTGTATCTATGACG 38545 Query 101987 TGTTTTAATTGGTCAACTCCTTCTCCTTTA--TAATCGCGCCCAACACCTTTATATTCTG 102044 | ||||| ||| || || ||| | || | |||||| | |||| || || | Sbjct 38544 TTTTTTAGTTGATCGACGCCT--TTGTTCACGTAATCGGTGTGCATGTCTTTGTACTCGG 38487 Query 102045 CTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCT 102091 |||| ||||| ||||| || |||||||| || || || ||||| ||| Sbjct 38486 CTCCAAAATGTCTCCATTGGAATCCATAAACGGGACCTAGATCACCT 38440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360956845410107