Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq24804 150 2e-31 seq47140 147 3e-30 seq28943 113 5e-20 seq7785 109 7e-19 >seq24804 Length=9356 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24387 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 24446 ||| || ||| ||||| || || || ||||| | |||||||||||| ||||| | || Sbjct 6701 TCAGTAGGATCCTTAACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTC 6642 Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAA 24506 ||||| | |||||||||||||||||| |||| || || | ||| || |||||| | | Sbjct 6641 TCAATAGTGATTTGAAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAG 6582 Query 24507 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 24566 || ||||| ||| ||||||||| || || || ||| ||| || ||||| || || || Sbjct 6581 AAACGTTCGACTAGATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACG 6522 Query 24567 TGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 24619 ||| ||||| | ||||| || ||| | ||||| | |||||| ||| ||| Sbjct 6521 TGTGAAATAAATTTCTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATC 6469 Score = 141 bits (156), Expect = 1e-28 Identities = 151/199 (76%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || | ||| ||||||||||| |||||||| ||||||||||| | ||||| |||| Sbjct 6972 AAAGTCAATCCAGGCATTAGGCCTCGCTTTTTGAGCCAAAATATTGCGGCAAAACTTCCA 6913 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT- 24304 |||||||| || ||||| || || ||||| || || | |||||||||| || |||| | Sbjct 6912 GAAAAGAAGATACCTTCGACAGCTGCAAACGCTATGATTCTTTCTCCAAAAGTGGCGTTT 6853 Query 24305 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 ||| ||||| || |||||||||| || ||| | || ||||||||||| || || Sbjct 6852 TGATCAGCAATCCATTTCAGAGCCCAATCTGCTTTCCTCTTGACACAAGGCATGGTTTCA 6793 Query 24363 ATAGCATTAAAGAGATAGT 24381 ||||| || || | | ||| Sbjct 6792 ATAGCGTTGAATAAAAAGT 6774 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 ||||| || || || || || ||||| || ||||| | ||||| ||||||||| || | Sbjct 7263 AATCTGTCGGCCACGAATTCAATATAGGTCTTCATTAATTCACTATTCATTCCGATCATC 7204 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 ||||| | ||| | || | ||||||||||||||| ||| ||||| ||||| Sbjct 7203 GATACTGGTAAAGCGTCGGTTAAAAATTCTTGTTCAATTATGACAGCGTCGCGAATAATT 7144 Query 24084 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 24143 | | | ||| |||| ||| | | ||||||||| |||||||||||||| ||| Sbjct 7143 TCGGTAATTTCTTCAACACTGGGTTTTTGAACTAAATGTTTGAACATCAAACATGCAAAA 7084 Query 24144 TCGCAGTGTAGACCCT 24159 ||| || | ||||| Sbjct 7083 TCGGTATGCAAACCCT 7068 >seq47140 Length=38879 Score = 147 bits (162), Expect = 3e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||| || || ||||| ||||| | || |||||||||||||| | |||||||| | Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 ||||||||||||||||| ||| || || | ||| ||||| ||| | | || ||||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 ||||||| ||||| || || || || ||||| |||||||||||||| || || Sbjct 14298 ACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATG 14239 Query 24576 AAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 24619 || | ||||| |||||| | ||||| | |||||| ||| ||| Sbjct 14238 AACTTCTTTTCTTCTGGTTTCAGTTTCTCCCAATCTCTGAAATC 14195 Score = 118 bits (130), Expect = 1e-21 Identities = 159/221 (72%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 |||||||| |||||||| || || || | ||| ||||| || || | ||| || Sbjct 14729 TCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTG 14670 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||||||||| | |||||| ||| |||||||| |||||||| || || ||||| || Sbjct 14669 AGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACGCT 14610 Query 24279 ATAAGTCTTTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 24335 || | ||||||||| || ||| | |||| |||||| | |||||||| || Sbjct 14609 ATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTGCT 14550 Query 24336 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 || | || || ||||||||||| || ||||| || || || Sbjct 14549 TTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATAG 14509 >seq28943 Length=35018 Score = 113 bits (124), Expect = 5e-20 Identities = 126/166 (76%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 54442 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGA 54501 |||||||||||| ||||| || || |||| || | || ||| || || || || |||| Sbjct 14949 GGTAGGAGAAGCATGCGTGAAGTATCTTTCGGATAATAAATTATAGGTTTCAATCGCTGC 15008 Query 54502 GTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560 ||| ||||| || | |||||||| || || || | ||| ||||||||||| |||| || Sbjct 15009 GTCGATATCTTCACCG-TGAATTCCGACAGCAACTCTCATCAACATGTGCTGTGGTCGTT 15067 Query 54561 CAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 |||| | ||| ||||||||||| || || || ||||| ||||| Sbjct 15068 CAACCACCTTTCCGTTTATTTTCAATAAATACGACTTTTCTAAAGT 15113 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| || |||||||| || || |||| | ||| || ||||| ||||| ||||| | Sbjct 13240 TACCTGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAA 13299 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 ||| || |||||||| |||||||||||||| || ||||| ||||||||||| | | | Sbjct 13300 AGATTCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAG 13359 Query 53269 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 53304 |||||| | ||| ||| | | ||||| ||||| Sbjct 13360 TGAATTTCTGACACCATATTGTTTTATTTTTTCTTT 13395 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 || || || || | |||||||| |||||||||||||||||||| ||||| ||| Sbjct 14063 ATTTCGGTACATAAATTACTACTTTTGATGGTTCCTAAATTTTGGTGATTTGATTTTCGA 14122 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 || || ||||| ||||| | ||| | || || || ||||||||||| || |||| ||| Sbjct 14123 TTGCAGGCATCTTTATATAACATGTAAGGAGTTCCTGTTTCAATCTGAGAGTCTAAAATT 14182 Query 53879 GC 53880 || Sbjct 14183 GC 14184 >seq7785 Length=64017 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 ||||||| ||||||||||| || || || | || |||||| || || ||||||| Sbjct 7320 TCCATCCATAAAAATGCATCGATGAAAGATTCGCGTACGACGGATCAGCAATGTGGATAT 7379 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| | ||| ||||||||||| || || || || ||||||||||| | || |||| Sbjct 7380 TCAAACTTTGTGACTGATCGATGAACGCACCTCTATCGGCAGCCATTTTCAAAATGGTCT 7439 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAA 53024 | ||| ||||||||||| ||||||||||| Sbjct 7440 TCTGTTTAATTTCCCAAACAGTTTTATAAA 7469 Score = 105 bits (116), Expect = 8e-18 Identities = 136/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 54431 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 54490 ||||||||||| ||||| ||||| || ||||| ||||| ||| | || ||| || || Sbjct 9368 GCATTAAATAAAGTAGGGGAAGCATGTGTAAAATATTTTAGAGACATTAAATTATAAGTT 9427 Query 54491 TCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || ||| ||||| ||||| |||| |||| || || | ||| ||||||||||| Sbjct 9428 TCAATAATCGAGTCAATATCTTCACCATGGATG----CCAACAGAGACCCGCATTAACAT 9483 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 ||| || || | ||| || | || ||| ||||||| || ||||| |||||||| || Sbjct 9484 GTGTTGGGGACGTTCGACAACACGGTCGTTGATTTTCAATAAATAGGACTTTTCCAATGT 9543 Query 54607 TTTAAAA 54613 | |||| Sbjct 9544 CTGAAAA 9550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593225419437360