Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq39894 95.1 1e-14 seq27679 91.5 1e-13 seq18352 86.0 5e-12 >seq39894 Length=23042 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| | || ||||| ||||| || ||| || || | Sbjct 12242 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 12183 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | |||| ||||||| || |||||||| | || ||||| Sbjct 12182 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 12123 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || ||||| | |||||| | ||| | |||||| ||| Sbjct 12122 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 12063 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| ||||||||||||||||| |||| ||||| Sbjct 12062 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTACG 12028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| || || |||||||| | || ||||||||| || | |||||||| Sbjct 12619 AAGCAAAAA-TTCAGGACAAAGAAGGCATTCCACCTGATCAACAACGATTGATCTTTGCC 12561 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || |||||| ||||||| |||| | |||||| |||||||| |||||||||||| Sbjct 12560 GGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAATATTCAAAAGGAATCTACT 12501 Query 29160 CTTCACATGGTGTTACG 29176 ||||| |||| ||||| Sbjct 12500 CTTCATTTGGTCTTACG 12484 >seq27679 Length=10833 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||||||||| || ||||| |||||| |||| |||||| || Sbjct 2011 ATGCAGATTTTCGTGAAAACATTGACTGGTAAAACTATTACCCTCGAAGTCGAACCCTCA 2070 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||||| || || ||||| ||||| | || || || Sbjct 2071 GATTCGATTGAAAATGTAAAGCAGAAGATCCAAGATAAGGAAGGCATCCCACCGGACCAG 2130 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || || || ||| |||||||| || ||| || | || |||||| Sbjct 2131 CAACGTTTGATCTTCGCTGGAAAGCAATTGGAAGATGGCAGGACTCTGTCTGACTACAAT 2190 Query 29142 ATTCAGAA 29149 |||||||| Sbjct 2191 ATTCAGAA 2198 >seq18352 Length=35742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| || || ||||||||||| ||| |||| || ||| Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||| |||||||| ||| | || || || Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || || || || |||||||| ||||| | ||| || | |||||||| Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAAC 19942 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| || || || |||| | || ||||| ||||| Sbjct 19943 ATTCAAAAAGAATCAACCCTACATTTGGTACTTCGTTTACGTGGAGG 19989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427986983394335