Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq18352 98.7 8e-16 seq39894 89.7 4e-13 >seq18352 Length=35742 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || || || ||||||||||| || |||| || ||| || |||| Sbjct 19974 AGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCGTCT 19915 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || ||||| || || |||| || | ||||||||| || | || || || || Sbjct 19914 TCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGGATACCCTCTTTATCT 19855 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | ||| || |||| |||||| ||| | ||| ||||| Sbjct 19854 TGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACTTCGAGGGTGATGGTT 19795 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||||| ||||| || || |||||||| Sbjct 19794 TTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| || | |||||| || ||||||||||||||||||| Sbjct 19533 CCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAA 19474 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || || |||||||| || |||| || | |||||||| ||| Sbjct 19473 AGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGA 19414 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| || ||| || || | | | ||| || | ||| || | Sbjct 19413 ATTCCCTCTTTGTCTTGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACT 19354 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || || ||||| || || || || || || |||||||| Sbjct 19353 TCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 >seq39894 Length=23042 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || || ||||||||||| |||||||| || || || | || Sbjct 12715 AGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTCAACGTACGGCCATCT 12774 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| |||||||| || |||| | ||| || |||||| || | |||||||| || Sbjct 12775 TCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCC 12834 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || |||||| | ||| || || ||||| |||| || |||||| Sbjct 12835 TGGATTTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACCTCCAAAGTGATGGTC 12894 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||| | ||||| || || || ||||| |||| Sbjct 12895 TTGCCGGTGAGAGTTTTAACGAAGATCTGCATCTTGA 12931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | ||| || ||||||||||| ||||| || || || || | || || Sbjct 12034 ACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTACGGCCATCTTCT 12093 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | |||||| || || | || | ||| ||||| || || | |||||| ||||| Sbjct 12094 AACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCCTGA 12153 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || ||| ||| || | ||| ||||| ||||| ||||| || ||||||||| Sbjct 12154 ATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTCTTG 12213 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| | ||||| || || |||||||| Sbjct 12214 CCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421915134890612