Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq39894 104 2e-17 seq2470 100 2e-16 seq27679 96.9 3e-15 seq18352 89.7 4e-13 seq38187 86.0 5e-12 >seq39894 Length=23042 Score = 104 bits (114), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||||| || || |||||||| | || ||||||||| || | |||||||| Sbjct 12619 AAGCAAAAA-TTCAGGACAAAGAAGGCATTCCACCTGATCAACAACGATTGATCTTTGCC 12561 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 || |||||||||||||| |||| | |||||| ||||||||||||||||||||| Sbjct 12560 GGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAATATTCAAAAGGAATCTACT 12501 Query 25233 CTTCACATGGTGTTACG 25249 ||||| |||| ||||| Sbjct 12500 CTTCATTTGGTCTTACG 12484 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || ||||| ||||| || ||| || || | Sbjct 12242 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 12183 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | || ||||||| || |||||||| | || ||||| Sbjct 12182 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 12123 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | ||||| || || ||||| || |||||| | ||| | |||||| ||| Sbjct 12122 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 12063 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||||||||||||||||||| |||| ||||| Sbjct 12062 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTACG 12028 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| | || || ||||| ||||| ||| ||||| | Sbjct 12015 AATGCAAATTTTCGTAAAAACGCTCACAGGAAAAACTATTACGTTGGAAGTAGAACCATC 11956 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || ||| | | || | || |||||| ||||| |||||| | || || || Sbjct 11955 CGACACGATTGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACCA 11896 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||| | || || || |||||||||||||||||| | || || ||| || || Sbjct 11895 ACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATAA 11836 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| ||||||||||| || || || |||| | || ||||| || || Sbjct 11835 TATCCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTTACGTGGTGG 11788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || || ||||||||| | || || || ||||||||||||||| Sbjct 12833 GATAAGGAAGGTATCCCACCGGACCAACAAAGATTAATTTTCGCCGGCAAACAATTGGAA 12774 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | || || ||| || ||||||||||||||||| || || || |||| | Sbjct 12773 GATGGCCGTACGTTGAGCGACTATAATATTCAAAAGGAATCAACCCTCCATCTGGTCCTT 12714 Query 25248 CGATTACGAGGAGG 25261 || ||||| || || Sbjct 12713 CGGTTACGTGGTGG 12700 >seq2470 Length=523 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| | || || ||||| ||||| ||| |||||| | Sbjct 234 AATGCAAATTTTCGTAAAAACGCTCACCGGAAAAACTATTACATTGGAAGTGGAACCATC 175 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || ||| | | || | || |||||| ||||| |||||| | || || || Sbjct 174 CGACACGATTGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACCA 115 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||| | || || || |||||||||||||||||| | || || ||| || || Sbjct 114 ACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATAA 55 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| ||||||||||| || || || |||| | || ||||| || || Sbjct 54 TATCCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTTACGTGGTGG 7 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || ||||| ||||| || ||| || || | Sbjct 461 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 402 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | || ||||||| || |||||||| | || ||||| Sbjct 401 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 342 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | ||||| || || ||||| || |||||| | ||| | |||||| ||| Sbjct 341 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 282 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| ||||| |||||||| |||| ||||| Sbjct 281 ATTCAAAAAGAATCGACTCTTCATTTGGTCTTACG 247 >seq27679 Length=10833 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||||||||| || ||||| |||||| |||| |||||| || Sbjct 2011 ATGCAGATTTTCGTGAAAACATTGACTGGTAAAACTATTACCCTCGAAGTCGAACCCTCA 2070 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||||| || || ||||| ||||| | || || || Sbjct 2071 GATTCGATTGAAAATGTAAAGCAGAAGATCCAAGATAAGGAAGGCATCCCACCGGACCAG 2130 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | ||||| || || || |||||||||||| || ||| || | || |||||| Sbjct 2131 CAACGTTTGATCTTCGCTGGAAAGCAATTGGAAGATGGCAGGACTCTGTCTGACTACAAT 2190 Query 25215 ATTCA-AAAGG--AATCTACTCTTCA 25237 ||||| ||||| | |||||| |||| Sbjct 2191 ATTCAGAAAGGTAACTCTACT-TTCA 2215 >seq18352 Length=35742 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| || || ||||||||||| ||| |||| || ||| Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| ||||| |||||||| ||| | || || || Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || || || || || |||||| | ||||| | ||| || | |||||||| Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAAC 19942 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| || || || |||| | || ||||| ||||| Sbjct 19943 ATTCAAAAAGAATCAACCCTACATTTGGTACTTCGTTTACGTGGAGG 19989 >seq38187 Length=9425 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||||||||| || | ||||| || || ||||||||| || Sbjct 3079 GATAAAGAAGGTATCCCACCGGATCAACAACGATTAATCTTCGCCGGTAAACAATTGAAA 3138 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | || || |||||| || |||||||| ||||| || ||||| |||||||| Sbjct 3139 GACGGCCGTACCTTGAGCGATTATAACATTCAAAAAGAATCCACACTTCATTTGGTGTTA 3198 Query 25248 CG 25249 || Sbjct 3199 CG 3200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410462074679798