Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18352 136 4e-27 seq24804 122 9e-23 seq39894 116 4e-21 seq47140 113 5e-20 seq2470 113 5e-20 >seq18352 Length=35742 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| ||||| |||| |||||| ||| | Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| |||||||| ||||||||||| || ||| | |||||| Sbjct 19367 GACACTATAGAAAATGTCAAGGCAAAAATTCAAGACAAAGAGGGAATTCCCCCCGACCAG 19426 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| |||||||| || || || | ||||| || ||||| ||| Sbjct 19427 CAACGTCTCATTTTCGCCGGCAAACAACTCGAAGATGGCCGCACACTTTCGGACTATAAC 19486 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || || || || |||| || || Sbjct 19487 ATTCAAAAAGAATCCACTCTCCA 19509 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||| | || |||||||| || ||| | || || || ||| Sbjct 19990 AATGCAAATTTTCGTAAAAACTTTAACTGGCAAAACGATTACCCTGGAAGTAGAGCCCAG 20049 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| |||||| ||||| | || ||||| ||||| || ||||||| Sbjct 20050 TGACACCATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCATACCTCCGGACCA 20109 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | || | ||| || |||||||| || |||| | ||||| |||||||| Sbjct 20110 GCAACGTTTAATTTTCGCCGGAAAACAGCTCGAAGACGGTAGAACCCTTTCTGACTACAA 20169 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| ||||| | ||||| ||| | || | || ||||| || || Sbjct 20170 CATCCAAAAGGAATCTACGCTCCATTTGGTTCTTCGTTTGAGAGGAGG 20217 Score = 123 bits (136), Expect = 3e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || ||||||||||||||| |||| || || ||| Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||||| | || |||||||| ||||| ||||||| Sbjct 19823 GACACCATCGAAAACG-TCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCA 19881 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | ||| || ||||| || || |||| || || | || ||||| Sbjct 19882 GCAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAA 19941 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| || || || | || || ||| Sbjct 19942 CATTCAAAAAGAATCAACCCTACAT 19966 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||| ||||| |||| |||||| | | | Sbjct 19535 ATGCAAATTTTCGTGAAAACATTAACCGGTAAAACTATCACGCTCGAAGTCGAACCAAGC 19594 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| ||||||| ||||| || || || || | ||||| Sbjct 19595 GACACTATTGAGAACG-TCAAGGCCAAAATTCAGGACAAGGAAGGTATACCACCTGACCA 19653 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| ||| || ||||| || || |||| | ||||| ||||||||| Sbjct 19654 ACAACGTCTTATCTTCGCCGGTAAACAACTCGAAGACGGAAGAACCCTTTCCGACTACAA 19713 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| || || |||| || || Sbjct 19714 CATCCAAAAAGAATCCACTCTCCA 19737 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| | || || ||||| ||||| |||| ||||| | | Sbjct 20218 AATGCAGATTTTCGTGAAAACCTTGACCGGAAAAACAATCACTCTCGAGGTCGAGCCTAG 20277 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | | ||||| |||||| ||||||| || ||||| ||||| || | || | Sbjct 20278 CGATACCATCGAAAACG-TCAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCCGATC 20336 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| || || | ||| ||||||||||| || || | | || || || || | Sbjct 20337 AGCAACGTCTTATTTTCGCTGGCAAACAGCTCGAAGATGGCAGAACGCTTTCGGATTATA 20396 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| || || | ||| | ||| | || ||||| Sbjct 20397 ACATCCAAAAAGAATCTACGTTACATTTGGTATTGCG 20433 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || |||||||||||| | || || ||||| |||||| |||| || ||| | Sbjct 19076 AAAATGCAGATCTTCGTAAAAACGTTGACTGGGAAAACGATCACCCTCGAGGTTGAACCA 19135 Query 40747 ACCGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | || ||||| | || | ||||||| || ||||| || || || | || Sbjct 19136 AGCGACACCATTGAAAACG-TTAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGA 19194 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||| | || | ||| || || || || || |||| | ||||| ||||| Sbjct 19195 TCAGCAACGTTTGATTTTCGCCGGAAAGCAACTCGAAGACGGTAGAACCCTATCAGACTA 19254 Query 40866 CAACATCCAGAAGGAG 40881 |||||| || || ||| Sbjct 19255 CAACATTCAAAAAGAG 19270 >seq24804 Length=9356 Score = 122 bits (134), Expect = 9e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 ||| || ||||| || || || ||||| || ||||| ||| || || ||||| ||| Sbjct 6778 TTTATTCAACGCTATTGAAACCATGCCTTGTGTCAAGAGGAAAGCAGATTGGGCTCTGAA 6837 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||| || | | | ||| | || || || | | | || || || || ||||| Sbjct 6838 ATGGATTGCTGATCAAAACGCCACTTTTGGAGAAAGAATCATAGCGTTTGCAGCTGTCGA 6897 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 || |||||||||| || ||||| ||||| |||||||||||||| || || ||||| || Sbjct 6898 AGGTATCTTCTTTTCTGGAAGTTTTGCCGCAATATTTTGGCTCAAAAAGCGAGGCCTAAT 6957 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 ||| || |||||||||| || || || || || || ||||| Sbjct 6958 GCCTGGATTGACTTTCAGTAATGAACTGATATCAAGAGACGA 6999 >seq39894 Length=23042 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| ||||| || ||||||||||| | || |||||| | | Sbjct 11786 ATGCAGATTTTCGTAAAAACTCTCACCGGAAAAACCATCACTTTGGAAGTCGAACCGTCG 11727 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | || | ||||| | || ||||| |||||||| | ||||| Sbjct 11726 GATACGATCGAAAACG-TAAAAGCGAAAATACAAGATAAAGAAGGCATCCCACCCGACCA 11668 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| ||| || ||||| |||| |||| || ||| | | || || || Sbjct 11667 GCAACGATTAATCTTCGCCGGTAAACAATTGGAAGACGGCCGTACCTTGAGTGATTATAA 11608 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| ||| |||| || || | ||||| || Sbjct 11607 TATTCAGAAAGAGTCCACACTTCACTTGGTGTTACG 11572 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||||||||| || ||||||||||| | || |||||| | || Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | || | |||||||| |||||||| ||||| || | || || Sbjct 12638 GATACGATCGAAAACG-TAAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCA 12580 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || ||||| |||| |||| || || |||| ||| || || Sbjct 12579 ACAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAA 12520 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||| | || || ||| | || || || Sbjct 12519 TATTCAAAAGGAATCTACTCTTCATTTGGTCTTACG 12484 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||||||||| || ||||| || || | || || ||| | | Sbjct 12015 AATGCAAATTTTCGTAAAAACGCTCACAGGAAAAACTATTACGTTGGAAGTAGAACCATC 11956 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | || ||| | | || | ||||||| || || || || ||||| |||||| Sbjct 11955 CGACACGATTGAAAATG-TGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACC 11897 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| || | || | ||| |||||||| |||| || | || || | | |||||| | Sbjct 11896 AACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATA 11837 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | ||||| ||||| | || || ||||| || Sbjct 11836 ATATCCAAAAGGAATCAACCCTCCATCTGGT 11806 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||| | || || ||||| || || | || |||||| | | Sbjct 12471 AATGCAAATTTTCGTAAAAACATTGACAGGAAAAACGATTACGTTAGAAGTCGAACCATC 12412 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | || |||| | || | ||||||| || || || || ||||| | |||| Sbjct 12411 CGACACGATTGAGAACG-TGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCCGACC 12353 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | |||||| | || | ||| || |||||||| || || | || || |||| |||||| | Sbjct 12352 AACAACGATTGATTTTCGCCGGTAAACAGCTTGAGGATGGTCGTACACTCAGCGACTATA 12293 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | ||||| ||||| | || || ||||| || Sbjct 12292 ATATCCAAAAGGAATCAACCCTCCATCTGGT 12262 >seq47140 Length=38879 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG-GCCGAGTGGGCGCTGCGCTG 117006 || ||||| ||||| || ||||| ||||| || ||||| || || ||||| || | || Sbjct 14512 TTCAACGCTATCGAAACAATGCCTTGCGTGAA-GAGAAAAGCAGATTGGGCATTGAGATG 14570 Query 117007 GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 ||| || | | | | || | || || || | | | || || || || ||||| || Sbjct 14571 GATAGCTGACCAAAACGCTACTTTTGGAGAAAGGATAATAGCGTTTGCAGCTGTCGAAGG 14630 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 ||||||||||||| ||||| || || ||||||||||||||||| | || || ||||| Sbjct 14631 AATCTTCTTTTCGGGAAGTTTTGCGGCGATATTTTGGCTCAAGAAGAGAGGTCTTATGCC 14690 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 || |||||||||| || || | || || || ||||| Sbjct 14691 TGGATTGACTTTCAGTAATGAATTAATATCGAGAGACGA 14729 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||| |||||| |||| |||||||| || ||| || ||||| || |||||| | Sbjct 14237 TTCATTTCGCACGTATTGGCGTTTTTCGCAGCGTCCGATGGTATCGTTAATGAGAATTTA 14296 Query 116804 GTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAG 116863 ||||| |||||| ||| ||||| || | | || || || | ||||||||| ||||| Sbjct 14297 GTCGAACGTTTCTTTCAAGAGGTACAAATTCCTGAAGCCCGATTCTTCTACGGATTTCAA 14356 Query 116864 ATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 ||| | || || || || || ||||||||||| Sbjct 14357 ATCACTATTGAAAATGTACATTCGGAAATGTA 14388 >seq2470 Length=523 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||||||||| || ||||| || || | || || ||| | | Sbjct 234 AATGCAAATTTTCGTAAAAACGCTCACCGGAAAAACTATTACATTGGAAGTGGAACCATC 175 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | || ||| | | || | ||||||| || || || || ||||| |||||| Sbjct 174 CGACACGATTGAAAATG-TGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACC 116 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| || | || | ||| |||||||| |||| || | || || | | |||||| | Sbjct 115 AACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATA 56 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | ||||| ||||| | || || ||||| || Sbjct 55 ATATCCAAAAGGAATCAACCCTCCATCTGGT 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514788624874320