Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7785 105 5e-18 >seq7785 Length=64017 Score = 105 bits (116), Expect = 5e-18 Identities = 233/344 (68%), Gaps = 8/344 (2%) Strand=Plus/Minus Query 97116 AGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCC 97175 ||||| ||| ||||||||| |||| | | | || || ||||| | |||||| | ||| Sbjct 38779 AGTGATATGAGCGATCATATAAGTGAGCAAGGCGTAACTTGCAATATCAAAAGGTATCCC 38720 Query 97176 TAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATA 97235 || ||||||||||| || | ||| || | ||||| || | | || | | | || Sbjct 38719 TAAACCCATATCAGCAGAACGTTGGTACACTTGACACGACAATTCACCGTTTACCGCGTA 38660 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 ||||| || |||||| || || || |||||||| | ||||| ||||| Sbjct 38659 GAACTGTGCTAAGCAATGACAAGGAGGTAAGGCCATTTTAGATGAATCTAGAGGGTTCCA 38600 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTT 97355 || || || | ||| | || |||| || | | || |||| || | | || Sbjct 38599 AGTGCATATGATTATTTGTTCATTATTTGGATTATTTTTAATTGTATCTATGACGTTTTT 38540 Query 97356 TAATTGATCAACGCCTTC-TCCACCATAAT---TGTGCTTAAGACCTTGATATTCTGCTC 97411 || |||||| ||||||| | ||| |||| ||||| | | | ||| || || |||| Sbjct 38539 TAGTTGATCGACGCCTTTGTTCACG-TAATCGGTGTGCAT--GTCTTTG-TACTCGGCTC 38484 Query 97412 CAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 ||||||| |||||||||||||||||||| || || || || ||| Sbjct 38483 CAAAATGTCTCCATTGGAATCCATAAACGGGACCTAGATCACCT 38440 Score = 98.7 bits (108), Expect = 7e-16 Identities = 231/343 (67%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||| || |||||||| |||| | | || || ||||| || || || || || ||| Sbjct 37262 GTGACGTGAGCGATCATGTAAGTGAGCAAGGAGTAACTAGCGATATTGAATGGTACGCCT 37203 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 | ||||||||||| || | ||||| | || || || | | || | | ||| Sbjct 37202 AAACCCATATCAGCAGAACGCTGATACATTTGGCATGACAATTCACCGTTTACTGCGTAA 37143 Query 97237 AACTG-ACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 ||||| ||| | | |||||| || || || |||||||| || | ||||| ||||| Sbjct 37142 AACTGTACTAAGCA-ATGACAAGGAGGTAAGGCCATTTTAGGTAAATCTAGAGGGTTCCA 37084 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTT 97355 ||||| | | |||| |||| | |||||| | ||||||| || | | | Sbjct 37083 CGCACATAAGATTATTCGTCTACAGTCTGGGTTATTCCTAATGGTATCTATGACGTTTTG 37024 Query 97356 TAATTGATCAACGCCTTCTCCACCATAAT---TGTGCTTAAGACCTTGATATTCTGCTCC 97412 || |||||| || |||| |||| ||||| | | | ||| || || ||||| Sbjct 37023 TAGTTGATCCACTCCTTTGTTCGTGTAATCGGTGTGCAT--GTCTTTG-TACTCAGCTCC 36967 Query 97413 AAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 ||||| |||||||||||||| |||||||| || || || ||| Sbjct 36966 GAAATGTCTCCATTGGAATCCGTAAACAGGACCGAGATCACCT 36924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346501433569490