Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq18352 143 2e-29 seq39894 122 8e-23 seq2470 122 8e-23 seq47140 100 2e-16 seq27679 86.0 5e-12 seq38187 84.2 2e-11 >seq18352 Length=35742 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | || ||| ||||| || | ||||| |||||||| ||||| ||||| Sbjct 20445 CCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAA 20386 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | ||| ||||||||||| |||||| | || ||||| |||||||||||||| Sbjct 20385 AGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGA 20326 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| || || ||| |||||| || || | ||||| ||| || | ||||||| Sbjct 20325 ATGCCTTCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACC 20266 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | ||||| ||||||| ||||| || ||||||||||| Sbjct 20265 TCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 20219 Score = 134 bits (148), Expect = 1e-26 Identities = 173/233 (74%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| ||||||| | ||||| || | || |||||||||||||||||||| | | Sbjct 19307 TACCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGT--C 19250 Query 118570 TCATAGTGCGCGTA---TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGG 118626 | |||| | | || || ||||| || ||||| ||| | || | ||| |||||||| | Sbjct 19249 TGATAGGGTTC-TACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTG 19191 Query 118627 GAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTC 118685 | ||||| || || || || |||||| |||||| | ||| | |||||| | || | Sbjct 19190 GCGGTATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGT- 19132 Query 118686 TCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||||| ||| | |||||| || |||| |||||||| || |||||||| Sbjct 19131 TCAACCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCAT 19079 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| ||||| | | ||||| || | || || |||||||||||||||||||| | Sbjct 19989 CCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGAC 19930 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || || ||||| ||||| || ||| | |||||||| ||||| || ||||| Sbjct 19929 AATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGG 19870 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||| || ||| ||||| || || | ||||| |||||| || ||| || Sbjct 19869 ATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACT 19810 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | ||||||||||| | |||||| || ||||| ||||| Sbjct 19809 TCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || || |||||||||||||| || || | ||||| ||| ||| Sbjct 19515 ACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCTTCG 19456 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || ||| | |||||||| ||||| ||||| || || ||||| |||||| | Sbjct 19455 AGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCTTGA 19396 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||||| || || | ||| | ||||| || ||||| |||| || | ||||||| Sbjct 19395 ATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTTTTG 19336 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || ||||| ||||| Sbjct 19335 CCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| ||||| || ||||| |||||||| || | || | || ||| Sbjct 20199 ACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCG 20140 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| ||| | || | ||| ||||| || ||||||||||| || || ||| Sbjct 20139 AGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTTATCTTGG 20080 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||||| |||||| || ||| || || | ||| | ||||||| Sbjct 20079 ATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCCAGGGTAATCGTTTTG 20020 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||||||||| ||||| ||||| Sbjct 20019 CCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 >seq39894 Length=23042 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||||||||| | ||| |||||||| ||||| || ||||| |||| || || || Sbjct 11575 AACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCCGTCT 11634 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | ||||| || ||| |||| | || ||||| ||||| || ||||| || || ||| Sbjct 11635 TCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTATCT 11694 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||||| ||| || | ||||| || |||| ||||| || | || | ||| Sbjct 11695 TGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATGGTT 11754 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||||||||| ||||||||||| Sbjct 11755 TTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || ||||| || | ||||| || |||||||| || |||||||| | ||| || || Sbjct 12487 AAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACCGTCT 12546 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | |||||||| || |||| | || || ||||| || || ||||| || ||||| Sbjct 12547 TCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTTGTCC 12606 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||||||| ||| || | ||||| || || | ||||| || | || | ||| Sbjct 12607 TGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGATGGTT 12666 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || |||||||||||||||||||| Sbjct 12667 TTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 >seq2470 Length=523 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || ||||| || | || || ||||||||||| || |||||||| | ||| || ||| Sbjct 250 AAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCATCT 309 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | ||||||||| ||| |||| | | |||||||| || || ||||| || ||||| Sbjct 310 TCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCC 369 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||||||| |||||| | ||||| || || | |||||| || | || | || Sbjct 370 TGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTC 429 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| |||||||| || || || ||||| Sbjct 430 TTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 >seq47140 Length=38879 Score = 100 bits (110), Expect = 2e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 44765 CTTTTGAATGGTTTCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAG 44824 || || || | | |||| | ||||| |||||| ||||| || || ||||| ||| Sbjct 14509 CTATTCAACGCTATCGAAACAATGCCTTGCGTGAAGAGAAAAGCAGATTGGGCATTGAGA 14568 Query 44825 TATATTGACGATGAAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAA 44884 | || | || |||| ||||| | ||| | | | || || || ||||||| Sbjct 14569 TGGATAGCTGACCAAAACGCTACTTTTGGAGAAAGGATAATAGCGTTTGCAGCTGTCGAA 14628 Query 44885 GGAGTGTTCTTTTCGGGGAGTTTTGCGGCGATATTTTACATGAAAACCAAGGGAGTGATG 44944 ||| | ||||||||||| ||||||||||||||||||| | || | | || | ||| Sbjct 14629 GGAATCTTCTTTTCGGGAAGTTTTGCGGCGATATTTTGGCTCAAGAAGAGAGGTCTTATG 14688 Query 44945 CCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAG 44987 || ||| |||| || || || ||||| || ||||||||||||| Sbjct 14689 CCTGGATTGACTTTCAGTAATGAATTAATATCGAGAGACGAAG 14731 >seq27679 Length=10833 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| ||||| ||||| || || ||| | ||| || | || ||||||||| ||| Sbjct 2200 CTTTCTGAATATTGTAGTCAGACAGAGTCCTGCCATCTTCCAATTGCTTTCCAGCGAAGA 2141 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | ||| ||||| || || || ||||| ||||| ||| || || || || || | || Sbjct 2140 TCAAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGATCTTCTGCTTTACATTTT 2081 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 | | | || | | ||||| |||| ||| | ||||| || |||| ||||| || | Sbjct 2080 CAATCGAATCTGAGGGTTCGACTTCGAGGGTAATAGTTTTACCAGTCAATGTTTTCACGA 2021 Query 118729 AAATCTGCAT 118738 |||||||||| Sbjct 2020 AAATCTGCAT 2011 >seq38187 Length=9425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 |||||||| || | ||| || |||||||||||||| |||||||||| || || || Sbjct 3197 AACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCGTCT 3138 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-C 118645 | | ||||| || ||| |||| | || || ||||| || || || || || || | | Sbjct 3137 TTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTATCC 3078 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCG 118704 ||| ||||| || || | ||| | || || | || |||||| | | || | | Sbjct 3077 TGT-ATTTTAGCCTTGACGTTTTCAATAGTATCGCATG-GCTCGACTTTCAATGTGATTG 3020 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| || ||||| || ||||| ||||| Sbjct 3019 TTTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433476906449044