Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq15818 125 1e-23 seq33840 113 8e-20 >seq15818 Length=31584 Score = 125 bits (138), Expect = 1e-23 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 189437 ACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCAT 189496 |||||||||| | |||||||||| | |||| ||| ||||||| ||||| |||||||| Sbjct 20563 ACTCATGATCTTTTATGGAACGCAGCCCAAAAGCAAATGGTGATTGAAGGCAAAATGCAC 20504 Query 189497 AGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGAC 189556 | || || |||||||||||||| ||||| ||| | || ||||||| | || ||||| Sbjct 20503 GGATTCTTGCGAATGTATTGGGCCAAGAAAATATTAGAGTGGACTACGAGTCCAGAAGAA 20444 Query 189557 GC-TTTGAGTTATAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAA 189615 || || ||| | | | || |||||||| | || ||| ||||| || | |||||||| Sbjct 20443 GCATTGGAGATCTCG-ATTTATTTGAATGATAAATACAGTCTAGATGGTAGAGATCCTAA 20385 Query 189616 CGGATACGTAGGT 189628 || || || ||| Sbjct 20384 TGGTTATGTTGGT 20372 >seq33840 Length=18965 Score = 113 bits (124), Expect = 8e-20 Identities = 156/215 (73%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 135727 GGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTC 135786 ||| | |||||||||||||||||| ||| || |||| ||||||| || |||||| | Sbjct 12922 GGTCTTTGCGATAATTTACTGACGACTACGCTACGAGCTTGGGATATAAGCAAACCTTTA 12981 Query 135787 ATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATATA 135846 | || || ||||| ||||||||| |||||||| |||||||| |||| | ||| | Sbjct 12982 TTATTTTGCCCTGCCATGAATACTAGAATGTGGGATCATCCTATAACAGCATCACA---A 13038 Query 135847 GATACG---TTAAAATATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCA 135903 | ||| ||||||| | ||||| |||||||| ||| || | |||||| | Sbjct 13039 GTAACGCAATTAAAATCTTGGGGTTATATAGAAATTCCATGTATCG--CGAAAACTTTAA 13096 Query 135904 TGTG--GAGACGTAGGAAATGGTGCTATGGCAGAA 135936 |||| ||| ||||||| ||||| ||||| ||| Sbjct 13097 TGTGCAAAGATGTAGGAATGGGTGCAATGGCCGAA 13131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922425272894280