Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq52549 120 3e-22 seq61253 118 1e-21 seq54220 111 2e-19 seq1221 111 2e-19 seq18352 105 8e-18 seq39894 96.9 4e-15 seq2470 91.5 2e-13 >seq52549 Length=3051 Score = 120 bits (132), Expect = 3e-22 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2158 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2099 Query 60117 TCACCACTATACTACCGAGGATTGAATATAT 60147 | ||||||||||||||||||||||| || || Sbjct 2098 TTACCACTATACTACCGAGGATTGAGTAAAT 2068 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1882 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1823 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 1822 TTACCACTATACTACCGAGGACTG 1799 >seq61253 Length=8203 Score = 118 bits (130), Expect = 1e-21 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2886 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2945 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | ||||||||||||||||||||||| Sbjct 2946 TTACCACTATACTACCGAGGATTGA 2970 >seq54220 Length=4742 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 4214 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4273 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 4274 TTACCACTATACTACCGAGGA 4294 >seq1221 Length=4918 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 61 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 62 TTACCACTATACTACCGAGGA 82 >seq18352 Length=35742 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | |||||| | |||||||| | || || |||||||| |||||||| | Sbjct 19990 TCCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGA 19931 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || || || ||||| ||||| ||||| || |||||||| | || Sbjct 19930 CAATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGG 19871 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| || || |||||| |||| | | | ||||| || | || || Sbjct 19870 GATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAAC 19811 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||||||||| |||| || || || || |||||||| Sbjct 19810 TTCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 >seq39894 Length=23042 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| || |||||||| | || |||||||||||||| ||||| ||||| || | Sbjct 12027 ACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTACGGCC 12086 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || |||| ||| || || ||||| || | || ||||| || | || | || || || Sbjct 12087 ATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTT 12146 Query 43088 GTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| |||||| || | || | | | ||| ||| || || || || | |||| Sbjct 12147 GTCC-TGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGA 12205 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || || || || ||||||||||| Sbjct 12206 TGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| || |||||||| | || |||||||||||||| ||||| ||||| || | Sbjct 12483 ACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACC 12542 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | || || || || || || | ||| || || || | || | || || || Sbjct 12543 GTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTT 12602 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| |||||| ||| | | | | ||| ||| || ||| || || | |||| Sbjct 12603 GTCC-TGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGA 12661 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || || ||||| |||||||| || ||||| Sbjct 12662 TGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| |||||||| || | |||| ||| || |||||||| |||||| || || || | Sbjct 11571 ACGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCC 11630 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | || ||||| ||||| || | ||| |||||||||| || | || || || Sbjct 11631 GTCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTT 11690 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||||| ||| | | | | ||| || || ||| || || | ||||| Sbjct 11691 ATCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGAT 11750 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || || || ||||| || || ||||| Sbjct 11751 GGTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 >seq2470 Length=523 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| || |||||||| | || || ||||||||||| ||||| ||||| || | Sbjct 246 ACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCC 305 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || |||| ||| || || ||||| || | || ||||| || | || | || || || Sbjct 306 ATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTT 365 Query 43088 GTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| |||||| || | || | | | ||| ||| || || || || | |||| Sbjct 366 GTCC-TGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGA 424 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || || || || ||||||||||| Sbjct 425 TGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571339724883960