Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq18352 134 2e-26 seq39894 123 4e-23 seq2470 120 5e-22 seq62430 114 2e-20 seq29790 96.9 5e-15 seq44468 84.2 3e-11 >seq18352 Length=35742 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| |||||||||||||| ||||||||||| || |||||||| ||| Sbjct 20445 CCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAA 20386 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || | ||||| ||||| ||||| | | ||||||||| |||||| Sbjct 20385 AGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGA 20326 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 20325 ATGCCTTCTTTATCTTG 20309 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||||||||| || || ||||| || || || ||||| || ||||| | || || Sbjct 19287 ACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGATAGGGTTCTACCGTCTTCG 19228 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| ||||| || |||||||| | ||||||||| || || || ||||||||||| || Sbjct 19227 AGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGGTATACCTTCTTTATCCTG 19169 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||||| || || || || || ||||| ||||| | || || Sbjct 20199 ACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCG 20140 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||| || ||||| || | |||||| |||||||| || |||||||||||||| Sbjct 20139 AGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTTATCTTG 20081 >seq39894 Length=23042 Score = 123 bits (136), Expect = 4e-23 Identities = 113/140 (81%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | ||| |||||||| | ||||||||| ||| || ||||||||||| Sbjct 12014 TTCCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGA-ATATTATAATCG 12072 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||| | || ||| ||||| |||||||| || || ||||||||||||||||| || Sbjct 12073 CTGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGT 12132 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| || || Sbjct 12133 GGAATGCCTTCTTTGTCCTG 12152 Score = 114 bits (126), Expect = 2e-20 Identities = 111/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | ||| |||||||| | ||||||||| ||| || ||||||||||| Sbjct 12470 TTCCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGA-ATATTATAATCG 12528 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||||| | || || ||||||||||| ||||| ||||||| ||| ||||| || Sbjct 12529 CTGAGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGT 12588 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| || || Sbjct 12589 GGAATGCCTTCTTTGTCCTG 12608 >seq2470 Length=523 Score = 120 bits (132), Expect = 5e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | ||| |||||||| | ||| |||||||| ||||||||||| Sbjct 233 TTCCACCGCGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGC 292 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||| | || ||| ||||| |||||||| || || ||||||||||||||||| || | Sbjct 293 TGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTG 352 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| || || Sbjct 353 GAATGCCTTCTTTGTCCTG 371 >seq62430 Length=23789 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || |||||| ||||| || ||||||||||| ||||| ||||| ||| Sbjct 14419 CCACCTCTTAATCGTAATACTAAATGCAACGTAGATTCTTTTTGGATATTGTAATCGGAA 14360 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || | |||||| ||||| |||||||| | ||| ||||| |||||| Sbjct 14359 AGAGTTCGTCCATCTTCGAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCAGGAGGA 14300 Query 146171 ATTCCT 146176 || ||| Sbjct 14299 ATACCT 14294 >seq29790 Length=24630 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 ||| || || || |||||||||||| | ||||| |||||||| | ||||| ||||| || Sbjct 7100 AGCCGGGGTCATAGACGAAGATTATCGTGGAAACGTGGGAGTCGTCTTATTCAATCACTC 7159 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 || ||||||| | ||| | | |||||||||| || | || | |||||||||| ||| Sbjct 7160 AGATCAAGATTTCAAAATCCAAAAAGGAGATAGAGTAGCACAGCTGATATGTGAAAGAAT 7219 Query 10619 TTT 10621 ||| Sbjct 7220 TTT 7222 >seq44468 Length=9025 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || || ||||||||||| ||||| || ||||| ||| | ||||| || || || Sbjct 6139 AGCTGGCGTGATAGACGAAGATTACAGAGGTAACGTGGGGGTACTGTTATTCAACCACTC 6198 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 || |||||| || | || | || ||||||||| |||| | || || |||| ||| Sbjct 6199 AGATACTGATTTTTTAGTCAAAAAGGGCGATAGAATAGCTCAGCTTATCTGCGAAAGAAT 6258 Query 10619 TTTATATCCTAAAATG 10634 || |||| ||| || Sbjct 6259 ATTCCATCCCAAATTG 6274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742905025693440