Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq18352 98.7 6e-16 seq39894 96.9 2e-15 seq2470 86.0 4e-12 >seq18352 Length=35742 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| |||||| || ||||| ||||| || || ||| | || Sbjct 19518 AGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCT 19459 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || ||||| ||||||||||| || ||||||||| ||| | | ||| ||||| Sbjct 19458 TCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCT 19399 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||| ||| | || |||| | ||| | | |||||| || | |||||| ||| Sbjct 19398 TGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTT 19339 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | || ||||| || || ||||| Sbjct 19338 TTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 >seq39894 Length=23042 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| || || || || || |||| |||| ||||| || || || ||||| Sbjct 11596 TCTTTCTGAATATTATAATCACTCAAGGTACGGCCGTCTTCCAATTGTTTACCGGCGAAG 11655 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | || ||||||||| || | || || || || ||| ||| ||||| | | Sbjct 11656 ATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTATCTTGTAT-TTTCGCTTTTACGTT 11714 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| ||| | || |||||| |||| ||||||||||| |||||||||||||| || Sbjct 11715 TTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATGGTTTTTCCGGTGAGAGTTTTTAC 11774 Query 34378 AAAGATCTGCAT 34389 || |||||||| Sbjct 11775 GAAAATCTGCAT 11786 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || || || |||||| || | |||| | || ||||| || ||||| ||||| Sbjct 12735 TTCCTTTTGAATATTATAGTCGCTCAACGTACGGCCATCTTCCAATTGTTTGCCGGCGAA 12794 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| | | || ||||| || | | ||||| || || ||| ||||| | | Sbjct 12795 AATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCCTGGAT-TTTAGCTTTCACGT 12853 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | |||| |||| || ||||| |||| |||||||| ||||||||||||||||| | Sbjct 12854 TCTCGATCGTGTCGGACGGCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAA 12913 Query 34377 CAAAGATCTGCATC 34390 | |||||||||||| Sbjct 12914 CGAAGATCTGCATC 12927 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | | |||| || | |||| ||| || || || || || ||| Sbjct 12015 TCCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCT 12074 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| | || || ||||| || || ||||| || | | ||||| || || Sbjct 12075 GAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGG 12134 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA-TCGGCTATCGAATCGGTCGATTCGA 34340 | || || ||||| || |||||||||| | | |||| ||||| || |||| Sbjct 12135 AATGCCTTCTTTGTCCTGAAT-TTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGA 12193 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| ||||||||||||||||| || ||||| ||||| Sbjct 12194 CTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 >seq2470 Length=523 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | | |||| || | ||| |||||| || || || || ||| Sbjct 234 TCCACCGCGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCT 293 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| | || || ||||| || || ||||| || | | ||||| || || Sbjct 294 GAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGG 353 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA-TCGGCTATCGAATCGGTCGATTCGA 34340 | || || ||||| || |||||||||| | | |||| ||||| || |||| Sbjct 354 AATGCCTTCTTTGTCCTGAAT-TTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGA 412 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| ||||||||||||||||| || ||||| ||||| Sbjct 413 CTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322808754573920