Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq24804 98.7 9e-16 seq47140 82.4 7e-11 >seq24804 Length=9356 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 16508 TAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAA 16567 ||||| || || | ||||||||||||||||||||| | |||||| || | || ||||| Sbjct 6683 TAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTGAAAT 6624 Query 16568 CCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTT 16627 || || || |||| ||||| | ||||| ||||| | || | ||| ||| ||| Sbjct 6623 CCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAGATTT 6564 Query 16628 TCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttt 16687 || ||||| || ||||| || || ||||| || | | |||| |||||| || ||| Sbjct 6563 TCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAATAAATTTCTTT 6504 Query 16688 tC 16689 || Sbjct 6503 TC 6502 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || |||||||| ||||| ||||| | ||||||||| |||||||| ||||||||||| Sbjct 6963 CCAGGCATTAGGCCTCGCTTTTTGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAG 6904 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 |||||||| || || ||||| || | | || || || | || |||| | | Sbjct 6903 ATACCTTCGACAGCTGCAAACGCTATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCA 6844 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 |||||||| |||||||| |||||| || ||||| |||| | || || || || Sbjct 6843 ATCCATTTCAGAGCCCAATCTGCTTTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTG 6784 Query 16475 AATAAA 16480 |||||| Sbjct 6783 AATAAA 6778 >seq47140 Length=38879 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 16051 CAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTT 16110 |||||| | |||||||||||| || |||||||| ||||| |||||||| |||| ||| Sbjct 15004 CAATTCGACCAATAATCTATCGGCTACAAATTCAATATAGGTCTTCATTAATTCACTGTT 14945 Query 16111 CATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGC 16170 |||||| || | || || | || || || ||||| | || ||| ||| |||| || Sbjct 14944 CATTCCAATCATCGATACTGGAAGAGCATCGGTCAAAAATTCTTGTTCGATAATAACAGC 14885 Query 16171 TTCAATGATTATATCTCTTACTACACTATTTAACGGAGGG--TTTAAT--AAGTGTTTAA 16226 ||| || || || | | | | || |||| ||| ||| || || ||||| | Sbjct 14884 GTCACGAATAATTTCGGTAATT----TCTTCAACGCTGGGCTTTTGATTCAAATGTTTGA 14829 Query 16227 ACATTATACAAGCAAAATC 16245 |||| | |||||||| || Sbjct 14828 ACATGAGGCAAGCAAAGTC 14810 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 15930 ACATAACTG-ACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||| ||| || ||| ||| ||||| | ||||||||| ||||||||||| ||||| || Sbjct 15199 ACATGACTCCACTTTTCTTG-TATTCTCCAACTCTCTTCTCAAAGAAATTCGTTTTACCA 15141 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 | || || ||||||||||||||||| || || |||| Sbjct 15140 TTCAAGGATATATTTTCCATAAAATCGAATGGGTTTT 15104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462125472940200