Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7785 194 1e-44 >seq7785 Length=64017 Score = 194 bits (214), Expect = 1e-44 Identities = 250/340 (74%), Gaps = 4/340 (1%) Strand=Plus/Plus Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || ||| | |||||||| || ||||| |||||||||||||| |||||||| || ||| Sbjct 36925 GGTGATCTCGGTCCTGTTTACGGATTCCAATGGAGACATTTCGGAGCTGAGTACAAAGAC 36984 Query 20278 ATGAACACAAATTATTTTGGACAA-GGAGTAGATCAATTACAAAATGTTATTAATTTAAT 20336 ||| |||| |||| | |||| ||||| |||||| ||||||| || || || || Sbjct 36985 ATGCACACCGATTACAC-GAACAAAGGAGTGGATCAACTACAAAACGTCATAGATACCAT 37043 Query 20337 TAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCC 20396 || | |||||| || ||| |||| || ||||| || |||||| || |||| | || Sbjct 37044 TAGGAATAACCCAGACTGTAGACGAATAATCTTATGTGCGTGGAACCCTCTAGATTTACC 37103 Query 20397 TTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAAT 20455 | |||||| || ||||| |||||| |||| | || ||||||| | || ||||| Sbjct 37104 TAAAATGGCCTTACCTCCTTGTCAT-TGCTTAGTACAGTTTTACGCAGTAAACGGTGAAT 37162 Query 20456 TGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTG 20515 |||| || ||||||||||| || || ||||||||||| | || || || |||||||| | Sbjct 37163 TGTCATGCCAAATGTATCAGCGTTCTGCTGATATGGGTTTAGGCGTACCATTCAATATCG 37222 Query 20516 CAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTAC 20555 | ||||| | |||| || || ||||| || || || || Sbjct 37223 CTAGTTACTCCTTGCTCACTTACATGATCGCTCACGTCAC 37262 Score = 188 bits (208), Expect = 6e-43 Identities = 246/335 (73%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || ||| | ||||| || |||||||| |||||||||||||||||||| || || ||| Sbjct 38441 GGTGATCTAGGTCCCGTTTATGGATTCCAATGGAGACATTTTGGAGCCGAGTACAAAGAC 38500 Query 20278 ATGAACACAAATTATTTTGGAC-AAGGAGTAGATCAATTACAAAATGTTATTAATTTAAT 20336 ||| |||| |||| || || |||| || |||||| || |||| || || || ||| Sbjct 38501 ATGCACACCGATTA-CGTGAACAAAGGCGTCGATCAACTAAAAAACGTCATAGATACAAT 38559 Query 20337 TAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCC 20396 ||||| || ||||| | | ||| || ||||| | |||||| || |||| | Sbjct 38560 TAAAAATAATCCAAATAATGAACAAATAATCATATGCACTTGGAACCCTCTAGATTCATC 38619 Query 20397 TTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAAT 20455 | |||||| || ||||| |||||| |||| || || || |||| | || ||||| Sbjct 38620 TAAAATGGCCTTACCTCCTTGTCAT-TGCTTAGCACAGTTCTACGCGGTAAACGGTGAAT 38678 Query 20456 TGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTG 20515 ||||||||||| |||| ||||| || ||||||||||| | || | ||||| |||||| Sbjct 38679 TGTCGTGTCAAGTGTACCAACGTTCTGCTGATATGGGTTTAGGGATACCTTTTGATATTG 38738 Query 20516 CAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 ||||||| || |||| || |||||||| || ||| Sbjct 38739 CAAGTTACGCCTTGCTCACTTATATGATCGCTCAT 38773 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| | || || || ||||| |||||||||||||| || || ||||| ||||||||| Sbjct 36690 TTTCCGCTGTTGACCACAAAACGAGTATTTTGGAAAGGTGTAGTAGAAGAATTATTATGG 36749 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGA 20161 || || | |||||| || ||||| | || | || |||||||| || ||||||| Sbjct 36750 TTCATCAGAGGATCTACGAATTCGAAAGAATTATCCGACAAAGGAGTGAAAATTTGGA 36807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398858737017865