Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq18352 89.7 4e-13 >seq18352 Length=35742 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | | ||||| || ||||| ||||| || ||||||||||| Sbjct 20217 CCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAA 20158 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| || || |||||||||||||| || || || || ||||| ||||| Sbjct 20157 AGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGT 20098 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || || ||||| ||| || | | | |||| | ||| || Sbjct 20097 ATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACT 20038 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||||||| ||||| || | ||| || || || |||||||| Sbjct 20037 TCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| || |||||||||||||| || | | |||| || ||||| ||||||||||| Sbjct 19270 CTCTTTTTGAATGTTGTAGTCTGATAGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAA 19211 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| || || || || || || | ||| || || ||| |||||| ||||| Sbjct 19210 AATCAAACGTTGCTGATCTGGCGGTATACCTTCTTTATCCTGAATTTTCGCTTTAACGTT 19151 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | || ||||| | ||| ||||| || || |||| || || || Sbjct 19150 TTCAATGGTGTCGCTTGGTTCAACCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTAC 19091 Query 45325 AAAGATTTGCATGTTGCCTCAAT 45347 ||||| ||||| |||| |||| Sbjct 19090 GAAGATCTGCATTTTGCTGCAAT 19068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394753284948997