Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq24804 125 7e-24 seq47140 109 5e-19 >seq24804 Length=9356 Score = 125 bits (138), Expect = 7e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 14240 ATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 14297 || ||||| || ||||| || ||||| ||||| | ||||| ||||| | |||||||| Sbjct 6987 ATCAGTTCATTACTGAAA--GTCAATCCAGGCATTAGGCCTCGCTTTTTGAGCCAAAATA 6930 Query 14298 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14357 |||| || || ||| |||||||| || || || || || ||||||||||| | || || Sbjct 6929 TTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACGCTATGATTCTTT 6870 Query 14358 CTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417 ||||||| | || |||| | | |||||||| |||||| || | ||| | || | Sbjct 6869 CTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTGCTTTCCTCTTGA 6810 Query 14418 TAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 | || ||| ||||||||||| || |||||| Sbjct 6809 CACAAGGCATGGTTTCAATAGCGTTGAATAAA 6778 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 || ||| || || || | ||| ||||||||||| || |||| || || |||| || || Sbjct 6687 AACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTG 6628 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAA 14592 ||| || || ||| |||| ||||| | ||| || ||| | || | |||| | | Sbjct 6627 AAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAG 6568 Query 14593 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14652 |||||||||||| ||||||||| || || |||||||| || | || | |||||| | Sbjct 6567 ATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAATAAATTT 6508 Query 14653 TTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATC 14703 | ||||| | ||||| | |||||| |||||| || ||| ||| Sbjct 6507 CTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATCC-TAAAAATATC 6458 >seq47140 Length=38879 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314 || || ||||| ||||| | |||| || || | ||||||||| || || || ||| Sbjct 14702 AAAGTCAATCCAGGCATAAGACCTCTCTTCTTGAGCCAAAATATCGCCGCAAAACTTCCC 14643 Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374 |||||||| ||||| || || || ||||||||||||| | ||||||||| | || ||| Sbjct 14642 GAAAAGAAGATTCCTTCGACAGCTGCAAACGCTATTATCCTTTCTCCAAAAGTAGCGTTT 14583 Query 14375 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14434 | || | ||||||| | ||||| || | |||| | || | || ||||||||| Sbjct 14582 TGGTCAGCTATCCATCTCAATGCCCAATCTGCTTTTCTCTTCACGCAAGGCATTGTTTCG 14523 Query 14435 ATAGCATTAAATA 14447 ||||| || |||| Sbjct 14522 ATAGCGTTGAATA 14510 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 13840 AATATTCAATAAAAACTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGA 13899 || ||| || |||| |||||||| |||| || ||| |||| ||| || | | Sbjct 15258 AAAATTAAAGGAAAATTAAAAATCGGCATCCAATTTAAATTCATTTTCGCCTGAGGGGAA 15199 Query 13900 AATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTC 13959 || || || |||| | ||||| | |||||| || |||||||| || |||||||| | Sbjct 15198 CATGACTCCACTTTTCTTGTATTCTCCAACTCTCTTCTCAAAGAAATTCGTTTTACCATT 15139 Query 13960 CAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 || |||||||||||||||||||| ||||| ||| Sbjct 15138 CAAGGATATATTTTCCATAAAATCGAATGGGTTT 15105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481942497752760