Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq18352 132 4e-26 seq38187 114 1e-20 seq2470 109 4e-19 seq39894 104 2e-17 seq27679 89.7 4e-13 >seq18352 Length=35742 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| |||| | |||||||| || || ||||||||||||||||||||||| || | Sbjct 19990 TCCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGA 19931 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || |||| | ||||| | |||||| || || | || || | ||| || ||| || Sbjct 19930 CAATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGG 19871 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || ||||| |||| |||||| | | | | ||||||| |||||| Sbjct 19870 GATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAAC 19811 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||||| |||||||||| || ||||| || ||||||||||| Sbjct 19810 TTCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||||||||| ||||||||||||| | ||| | | ||| Sbjct 19746 AGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCT 19687 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || || ||||||| | |||||| || || | |||||||| || Sbjct 19686 TCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTCC 19627 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| |||||| | || ||| ||| | ||||| || Sbjct 19626 TGAATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTT 19567 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| |||||||| || ||||||||||| Sbjct 19566 TTACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||||||||||||||| ||||| | | ||| | |||| Sbjct 19518 AGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCT 19459 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||||||| || | || || | ||| || || ||| | || || || || Sbjct 19458 TCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCT 19399 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| | |||||| | | | | |||||| | ||| ||| ||| | ||||| || Sbjct 19398 TGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTT 19339 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || || ||||||||||| Sbjct 19338 TTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || || ||||| ||||| ||||||||||| | | ||| ||| || Sbjct 20203 AAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTACCGTC 20144 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | ||||| || || | || | | ||| || ||| || | |||||| ||||| Sbjct 20143 TTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTTATC 20084 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| |||||| | | | | ||||||| |||||| ||| | ||| || | Sbjct 20083 TTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCCAGGGTAATCGT 20024 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||||| || || |||||||| |||||||||||| Sbjct 20023 TTTGCCAGTTAAAGTTTTTACGAAAATTTGCATT 19990 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| | ||||| || | || ||||||||||| ||||| || || | Sbjct 20445 CCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAA 20386 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||| | |||||||| || | ||||| | ||| ||||| || Sbjct 20385 AGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGA 20326 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| ||||| ||||| |||||| | | | | || || | |||||| Sbjct 20325 ATGCCTTCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACC 20266 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||| |||| |||||||| ||||| || ||||| |||||| Sbjct 20265 TCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCATT 20218 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| |||| || || |||| || | || || |||||||||||||||||||| | Sbjct 19305 CCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGAT 19246 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| ||||| | ||| || || || | || | | ||| ||||| || Sbjct 19245 AGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGGT 19186 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||||| | || || || | | ||| ||||| | || || Sbjct 19185 ATACCTTCTTTATCCTGAATTT-TCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAAC 19127 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | |||||| |||| || ||||| |||||||| || || |||||||| Sbjct 19126 CTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCATTTT 19076 >seq38187 Length=9425 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||||| ||||||||||||||||| || ||| || || | |||| | Sbjct 3194 ACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCGTCTTTC 3135 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || || |||| | || |||||||||| || | ||||| ||||| Sbjct 3134 AATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTATCCTGT 3075 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG-TTTCAATGGTGATGCTTTT 18295 |||| |||||| | | ||| ||| || | |||||| |||||||| |||| |||| Sbjct 3074 ATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATG-TGATTGTTTT 3016 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | ||||| || ||||||||||| Sbjct 3015 ACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 >seq2470 Length=523 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | ||| |||| || || |||||||| ||||| || || |||||| | Sbjct 7 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 66 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||||||||||||| || | || | ||||||||| ||| || Sbjct 67 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 126 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| | || || || | | ||| ||||| || || Sbjct 127 ATACCTTCCTTATCTTGAATTT-TGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCAC 185 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || || |||| ||||| | |||||||| |||||||||||| Sbjct 186 TTCCAATGTAATAGTTTTTCCGGTGAGCGTTTTTACGAAAATTTGCATT 234 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 ||| || || || | |||| |||| ||||| || |||||||||||||| || || ||| Sbjct 234 TCCACCGCGAAGACGTAAG-ACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGC 292 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 | || | |||||| || ||||| || || |||| | |||||| ||||| | Sbjct 293 TGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTG 352 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 | | |||||| || || ||||| |||| || || | | | | || || |||||| Sbjct 353 GAATGCCTTCTTTGTCCTGAATTT-TTGCTTTAACGTTTTCGATCGTATCGGACGGCTCG 411 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | |||||||| | ||||| || || |||||||| Sbjct 412 ACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 >seq39894 Length=23042 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | ||| |||| || || |||||||| ||||| || || |||||| | Sbjct 11788 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 11847 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||||||||||||| || | || | ||||||||| ||| || Sbjct 11848 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 11907 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| | || || || | | ||| ||||| || || Sbjct 11908 ATACCTTCCTTATCTTGAATTT-TGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTAC 11966 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || || |||| || || | |||||||| |||||||||||| Sbjct 11967 TTCCAACGTAATAGTTTTTCCTGTGAGCGTTTTTACGAAAATTTGCATT 12015 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 ||| || || || | |||| |||| ||||| || ||||| |||||||| || || ||| Sbjct 12471 TCCACCGCGAAGACGTAAG-ACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGC 12529 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 | ||| || |||||||||||||| || ||| |||| | || ||||||||| | Sbjct 12530 TGAGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTG 12589 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 | | |||||| || || ||||| |||| || || | | | | || || || ||| Sbjct 12590 GAATGCCTTCTTTGTCCTGAATTT-TTGCTTTTACGTTTTCGATCGTATCGGACGGTTCG 12648 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| || || | |||||||||||||| ||||| Sbjct 12649 ACTTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | ||| |||| || || |||||||| |||||||| || |||||| | Sbjct 12700 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTC 12759 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||||||||| || | || | ||||||||| ||| || Sbjct 12760 AACGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 12819 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| |||| | || || || | | | ||||| |||||| Sbjct 12820 ATACCTTCCTTATCCTGGATTT-TAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGAC 12878 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | |||||| | |||||||| | ||||| || || || ||||| || Sbjct 12879 CTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATCTGCATCTT 12929 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | ||| |||| || || |||||||| ||||| || || |||||| Sbjct 12244 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTG 12303 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| || | ||||| || || | || | || |||||| || || Sbjct 12304 AGTGTACGACCATCCTCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGG 12363 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| | || || || | ||| ||||| || ||| Sbjct 12364 ATACCTTCCTTATCTTGAATTT-TGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGAC 12422 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || || |||| || |||||||||||||| |||||||||||| Sbjct 12423 TTCTAACGTAATCGTTTTTCCTGTCAATGTTTTTACGAAAATTTGCATT 12471 >seq27679 Length=10833 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 |||| ||||| |||||||| | || || | | |||||||||||| || || || ||| Sbjct 2200 CTTTCTGAATATTGTAGTCAGACAGAGTCCTGCCATCTTCCAATTGCTTTCCAGCGAAGA 2141 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | | | ||| || ||| || | |||||||||||| || | ||||| || | | Sbjct 2140 TCAAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGATCTTCTGCTTTACATTTT 2081 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 ||| | || ||| ||| ||| | ||| || |||| || ||||||||||| || | Sbjct 2080 CAATCGAATCTGAGGGTTCGACTTCGAGGGTAATAGTTTTACCAGTCAATGTTTTCACGA 2021 Query 18316 AAATTTGCATTTTTAAA 18332 |||| ||||| | |||| Sbjct 2020 AAATCTGCATCTGTAAA 2004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379034903040465