Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq18352 111 1e-19 seq39894 96.9 3e-15 >seq18352 Length=35742 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || || ||||| || ||||||||||| || |||| |||||| | ||| Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||||| ||| |||| ||||||| | ||||| || | || |||||| Sbjct 19367 GACACTATAGAAAATGTCAAGGCAAAAATTCAAGACAAAGAGGGAATTCCCCCCGACCAG 19426 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT 24987 |||||| | || | || ||||||||||| |||||| Sbjct 19427 CAACGTCTCATTTTCGCCGGCAAACAACTCGAAGAT 19462 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || ||||| || || || |||||||| ||| |||| || ||| | ||| Sbjct 19079 ATGCAGATCTTCGTAAAAACGTTGACTGGGAAAACGATCACCCTCGAGGTTGAACCAAGC 19138 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||||| | |||||| | |||||||| ||||| || ||| Sbjct 19139 GACACCATTGAAAACGTTAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGATCAG 19198 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGA--TTCCATGACTATGAACGATTACA 25009 |||||||| || | || || || ||||| ||||| | | |||| | || |||| Sbjct 19199 CAACGTTTGATTTTCGCCGGAAAGCAACTCGAAGACGGTAGAACCCTATCA--GACTACA 19256 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| || |||||| | || | ||||| || | ||||| || |||||| Sbjct 19257 ACATTCAAAAAGAGTCGACCTTACATTTGGTTCTCCGATTACGAGGAGGT 19306 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || ||||| ||||| ||||||||||| ||| | || || || | || Sbjct 19991 ATGCAAATTTTCGTAAAAACTTTAACTGGCAAAACGATTACCCTGGAAGTAGAGCCCAGT 20050 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| |||| ||||| | ||||||||| |||| |||||| Sbjct 20051 GACACCATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCATACCTCCGGACCAG 20110 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | || || ||||| || ||||| | || | || |||| | Sbjct 20111 CAACGTTTAATTTTCGCCGGAAAACAGCTCGAAGACGGTAGAACCCTTTCTGACTACAAC 20170 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || || || || | ||||| ||||| || | || ||| | ||||| Sbjct 20171 ATCCAAAAGGAATCTACGCTCCATTTGGTTCTTCGTTTGAGAGGAGG 20217 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || |||||||| |||||||||||||| || ||| |||| || || | || Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| || |||| ||||| | ||||| || | || |||||| Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | || || |||||||| ||||| | || || ||||||| | Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAAC 19942 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || || ||||| | || || ||||| || | || || || ||||| Sbjct 19943 ATTCAAAAAGAATCAACCCTACATTTGGTACTTCGTTTACGTGGAGG 19989 >seq39894 Length=23042 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || ||||| | ||||| ||||| || || | || |||||| || Sbjct 11786 ATGCAGATTTTCGTAAAAACTCTCACCGGAAAAACCATCACTTTGGAAGTCGAACCGTCG 11727 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| || || | ||||| | ||||||||| | || |||||| Sbjct 11726 GATACGATCGAAAACGTAAAAGCGAAAATACAAGATAAAGAAGGCATCCCACCCGACCAG 11667 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| ||||| | || || |||||| ||||||| | || ||| ||||| | Sbjct 11666 CAACGATTAATCTTCGCCGGTAAACAATTGGAAGACGGCCGTACCTTGAGTGATTATAAT 11607 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||||||| |||| ||||| || |||||||| | || || ||| Sbjct 11606 ATTCAGAAAGAGTCCACACTTCACTTGGTGTTACGTCTTCGTGGTGGT 11559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417963157665440