Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq24804 159 4e-34 seq47140 152 6e-32 seq7785 123 3e-23 seq28943 118 1e-21 >seq24804 Length=9356 Score = 159 bits (176), Expect = 4e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 33834 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33893 ||| || ||| ||||| ||||| |||||||| | |||||||||||| ||||| | || Sbjct 6701 TCAGTAGGATCCTTAACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTC 6642 Query 33894 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 33953 ||||| | || ||||||||||||||| |||| || || | ||| || |||||| | | Sbjct 6641 TCAATAGTGATTTGAAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAG 6582 Query 33954 AATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACA 34013 || ||||| ||| ||||||||| || || |||||| ||| || ||||| || || || Sbjct 6581 AAACGTTCGACTAGATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACG 6522 Query 34014 TGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 ||| ||||| | ||||| || ||| | ||||| | |||||| ||| ||| Sbjct 6521 TGTGAAATAAATTTCTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATC 6469 Score = 136 bits (150), Expect = 5e-27 Identities = 166/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 |||||||| || | ||| ||| || || | ||| ||||||||||| |||||||| Sbjct 6999 TCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTG 6940 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||| | || || ||| ||||||||||| ||||| || || ||||| || Sbjct 6939 AGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACGCT 6880 Query 33726 ATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | ||| |||||| || |||| | ||| ||||| || |||||||||| || Sbjct 6879 ATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTGCT 6820 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828 ||| | || ||||||||||| ||||| || || || || | | ||| Sbjct 6819 TTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATAAAAAGT 6774 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 ||||| || || |||||||| ||||| || ||||| | ||||| ||||||||| || | Sbjct 7263 AATCTGTCGGCCACGAATTCAATATAGGTCTTCATTAATTCACTATTCATTCCGATCATC 7204 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 ||||| | ||| | || | ||||||||||||||| || || | ||||| Sbjct 7203 GATACTGGTAAAGCGTCGGTTAAAAATTCTTGTTCAATTATGACAGCGTCGCGAATAATT 7144 Query 33531 AATCTAACGGTTTCTT---CACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 ||| |||||| |||| ||| || | ||||||||| |||||||||||||| Sbjct 7143 TCGGTAA---TTTCTTCAACACTGGGTTTTTGAACTAAATGTTTGAACATCAAACATGCA 7087 Query 33588 AAATCGCAGTGCAGACCCT 33606 |||||| |||| ||||| Sbjct 7086 AAATCGGTATGCAAACCCT 7068 >seq47140 Length=38879 Score = 152 bits (168), Expect = 6e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||| || |||||||||||||| | || |||||||||||||| | |||||||| | Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || |||||||||||||| ||| || || | ||| || || ||| | | || ||||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 ||||||| ||||| || || ||||| ||||| |||||||||||||| || || Sbjct 14298 ACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATG 14239 Query 34023 AAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 || | ||||| |||||| | ||||| | |||||| ||| ||| Sbjct 14238 AACTTCTTTTCTTCTGGTTTCAGTTTCTCCCAATCTCTGAAATC 14195 Score = 109 bits (120), Expect = 7e-19 Identities = 157/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 |||||||| |||||||| ||| || || | ||| ||||| || || | ||| || Sbjct 14729 TCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTG 14670 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||| | || || ||| ||||||||||||||||| || || ||||| || Sbjct 14669 AGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACGCT 14610 Query 33726 ATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | || |||||| || ||| | |||| |||||| | |||||||| || Sbjct 14609 ATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTGCT 14550 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 || | || || |||||||| ||||| || || || || || Sbjct 14549 TTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATAG 14509 >seq7785 Length=64017 Score = 123 bits (136), Expect = 3e-23 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || || | |||| | |||| || | ||||||||||| ||||| ||||| || ||||| Sbjct 9341 CTTGATAGTTGGGGTCGAGGTGTCGCAGCATTAAATAAAGTAGGGGAAGCATGTGTAAAA 9400 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATG 63757 ||||| ||| | || ||| || || |||||| ||||| ||||| |||| |||| Sbjct 9401 TATTTTAGAGACATTAAATTATAAGTTTCAATAATCGAGTCAATATCTTCACCATGGATG 9460 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 || || | ||| |||||||||||||| || || | ||| |||| || ||| || Sbjct 9461 ----CCAACAGAGACCCGCATTAACATGTGTTGGGGACGTTCGACAACACGGTCGTTGAT 9516 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63851 |||||| || ||||| |||||||| || | |||| Sbjct 9517 TTTCAATAAATAGGACTTTTCCAATGTCTGAAAA 9550 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 ||||||| ||||||||||| | || || | || |||||| || || ||||||| Sbjct 7320 TCCATCCATAAAAATGCATCGATGAAAGATTCGCGTACGACGGATCAGCAATGTGGATAT 7379 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| | ||| ||||||||||| || || || || ||||||||||| | || |||| Sbjct 7380 TCAAACTTTGTGACTGATCGATGAACGCACCTCTATCGGCAGCCATTTTCAAAATGGTCT 7439 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAA 62262 | ||| ||||||||||| ||||||||||| Sbjct 7440 TCTGTTTAATTTCCCAAACAGTTTTATAAA 7469 >seq28943 Length=35018 Score = 118 bits (130), Expect = 1e-21 Identities = 140/187 (75%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 |||||| | || | || | |||||||||||| ||||| || || |||| || | || Sbjct 14928 AGTAGTAGCAGCGCTGAAAAGGGTAGGAGAAGCATGCGTGAAGTATCTTTCGGATAATAA 14987 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCA 63777 ||| || || ||||| |||| ||| ||||| || | |||||||| || || || | || Sbjct 14988 ATTATAGGTTTCAATCGCTGCGTCGATATCTTCACCG-TGAATTCCGACAGCAACTCTCA 15046 Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63837 | ||||||||||| |||| |||||| | || |||||||||||| || || || |||| Sbjct 15047 TCAACATGTGCTGTGGTCGTTCAACCACCTTTCCGTTTATTTTCAATAAATACGACTTTT 15106 Query 63838 CCAAAGT 63844 | ||||| Sbjct 15107 CTAAAGT 15113 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| ||||||||||| || || |||| | ||| || ||||| ||||| ||||| | Sbjct 13240 TACCTGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAA 13299 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || || |||||||| |||||||||||||| || ||||| ||||||||||| | | | Sbjct 13300 AGATTCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAG 13359 Query 62507 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62542 |||||| | ||| ||| | | ||||| ||||| Sbjct 13360 TGAATTTCTGACACCATATTGTTTTATTTTTTCTTT 13395 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 || || || || | |||||||| ||||| |||||||||||||| ||||| ||| Sbjct 14063 ATTTCGGTACATAAATTACTACTTTTGATGGTTCCTAAATTTTGGTGATTTGATTTTCGA 14122 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 || || ||||| ||||| | ||| | ||||| || |||||||||||||| |||| ||| Sbjct 14123 TTGCAGGCATCTTTATATAACATGTAAGGAGTTCCTGTTTCAATCTGAGAGTCTAAAATT 14182 Query 63117 GC 63118 || Sbjct 14183 GC 14184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629291253558960