Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7785 154 1e-32 seq24804 145 7e-30 seq47140 141 9e-29 seq28943 111 1e-19 >seq7785 Length=64017 Score = 154 bits (170), Expect = 1e-32 Identities = 290/422 (69%), Gaps = 6/422 (1%) Strand=Plus/Plus Query 37951 ccccATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCT 38010 ||||| |||| | || || |||||||| | || ||||| ||| ||||| | |||| Sbjct 8841 CCCCAACAATCGAACAACCCGGGACATTCACTGGGGCACATCAGACTCCATTTTACATCA 8900 Query 38011 TTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGT 38069 ||||| || | | |||||| ||| || | |||||| || ||| ||||||||| | | Sbjct 8901 TTTTCAACCCTTCTCATAAACTCATCGGGAATCCATAAAGC-GTAGAATAAATCTCTTGC 8959 Query 38070 TCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTG 38129 | | | ||||| || || ||||||||| | | |||||||| ||| | | || Sbjct 8960 ACGAGACTCTTCTTTACCGGAATTCTTTCTCAGTTCCAAGAAATCGAAAATAACCGAATG 9019 Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATA 38189 ||| ||||||| ||||| | | || || |||||||| | ||||| |||| | ||| Sbjct 9020 CCAAGGTTCTAAGTAAATGGCAAAAGCACCCGGTCTTTTGTTGCCTCCTTGATCGACATA 9079 Query 38190 TCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTAT 38249 ||| |||||||||| || | | | |||||| || | ||| |||||| |||||| | Sbjct 9080 TCTGGCTGTGTTATTGTAAACGCGGAGCATAGGAACGAGACCGTTAGATACACCGTTTGT 9139 Query 38250 ACCGGATATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCT 38307 || | ||||| || |||||| || | | ||| ||| || |||||||| Sbjct 9140 TCCAGCGATATAGCTATTGGTAGCTCTGATGCAGTGTATATGCACA--CCAATTCCACCG 9197 Query 38308 GCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCA 38367 || ||| ||||| | ||| || | | || || | ||||||||||| ||||| ||| Sbjct 9198 GCTGATTTCGATATCAGAGCACAATTCGTCAAGGTGTGGAATATACCTTCGATACTATCA 9257 Query 38368 TC 38369 || Sbjct 9258 TC 9259 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413 |||||||| |||| || | || || || ||||| || || || |||| || |||||| Sbjct 8036 CCTTTACTGACTGGTGATCCTTTGTAAGTTTCATACGGCCCATATATTTGGGCAAGTTCG 8095 Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 ||||| | ||| | || | || || || ||||| ||||| |||| ||| | || | Sbjct 8096 CAACTGGCTTCCAAGGCACCGTAGTAAATAGTTTCAAAAATCTGTACATTGAGTAACTGA 8155 Query 37474 GCTTCTTCGCTATCGAATGCATAGCCCAATAAT-ATAAACACATCAGCCAAACCCTGAAC 37532 | | |||||| ||||| | ||||| || || ||||| | || || || || || | Sbjct 8156 GACTTTTCGCTTTCGAAAG-GTAGCCTCATCATGATAAAGAGGTCGGCTAATCCTTGGAT 8214 Query 37533 ACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 ||| || || || |||| ||||||| ||| ||| Sbjct 8215 ACCTATTCCAATCGGTCGATGTTTCAGATTTGAT 8248 >seq24804 Length=9356 Score = 145 bits (160), Expect = 7e-30 Identities = 168/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||||||||| ||| ||||||||| || || ||||| ||||| | ||||| |||| Sbjct 7001 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 6942 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||||||||| || ||||| ||||||||||| || || || ||||||||||| | Sbjct 6941 TGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACG 6882 Query 11772 CTACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAG 11828 ||| | |||||||||| | | | | ||| | || |||||||| |||||||| | Sbjct 6881 CTATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTG 6822 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 ||||| | || || || ||| ||||| |||||||| |||||| Sbjct 6821 CTTTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATAAA 6778 Score = 105 bits (116), Expect = 6e-18 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 11897 ACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGA 11956 || || || || || ||||||||||||||||||||||| | ||| || |||| |||||| Sbjct 6686 ACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTGA 6627 Query 11957 AATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAA 12016 ||||| |||||| ||| || || | | || || || | | || | ||| ||| | Sbjct 6626 AATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAGA 6567 Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 || ||||| || ||||||||| | || |||||||||| | ||| ||||| | Sbjct 6566 TTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAATAAATTTC 6507 Query 12077 TTTTCGTC---TTTAGTTAATTTATCCCAATCATCT-AAATC 12114 ||||| || |||| | ||| |||||||| ||| ||||| Sbjct 6506 TTTTCTTCGGGTTTA---AGTTTCTCCCAATC-TCTGAAATC 6469 >seq47140 Length=38879 Score = 141 bits (156), Expect = 9e-29 Identities = 166/222 (75%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||||||||| ||||| ||||||| || || ||||| ||||| | |||| || | Sbjct 14731 CTTCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCT 14672 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||||||||| || ||||| || |||||||| ||||| || ||||||||||| | Sbjct 14671 TGAGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACG 14612 Query 11772 CTACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAG 11828 ||| || ||||||||| | || | | ||| | || ||||||| | |||||||| | Sbjct 14611 CTATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTG 14552 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| | || ||||| ||||||||| |||||||| |||| Sbjct 14551 CTTTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATA 14510 Score = 111 bits (122), Expect = 1e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 ||| |||| || ||||| || ||||| || |||||||| ||||| | |||||| |||| Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCC 12010 ||||||||||| ||||| |||| || || | | ||||| || | | || | ||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 12011 GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATA 12070 ||||||||||||| || |||||||| | ||| ||||| || | || || || Sbjct 14298 ACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATG 14239 Query 12071 AAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT-AAATC 12114 || | ||||| ||| | | ||| |||||||| ||| ||||| Sbjct 14238 AACTTCTTTTCTTCTGGTTTCAGTTTCTCCCAATC-TCTGAAATC 14195 >seq28943 Length=35018 Score = 111 bits (122), Expect = 1e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || ||||| ||||| |||| ||| ||||| ||||| |||||||||||| | Sbjct 13241 ACCTGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAAA 13300 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || || ||||| | ||| ||||||| || || ||||||||||| ||||| | |||||| Sbjct 13301 GATTCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAGT 13360 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313 |||||| | |||| | || ||| | | ||| | || ||| |||||||| Sbjct 13361 GAATTTCTGACACCATATTGTTTTATTTTTTCTTTCAACGCAGCCCAGTCCCATAA 13416 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 37969 CCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATA 38028 || ||||||| | || ||||| ||| ||||| ||| ||||||||||| || |||| Sbjct 14358 CCAGGACATTGACTAGGGCACATAAGACTCCATTTTTCTTCTTTTTCTACACGCCGCATA 14417 Query 38029 AATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088 || ||| |||| |||||| ||| ||||||||| | | |||| |||||||| || Sbjct 14418 AACTCATCCGGTATCCATAACGCATAAAATAAATCCCTAGCTCTAATTTCTTCGTGGCCG 14477 Query 38089 ACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATC 38148 ||| || | ||| || || || || ||||| |||||||| ||||| | ||||| Sbjct 14478 GTATTTTTACGTAAATCTAAGAAGTCAAAGATATCGGCGTGCCAAGGTTCAAGATAAACA 14537 Query 38149 GACATTGCTCCTGG 38162 | | |||||||| Sbjct 14538 GCGAAAGCTCCTGG 14551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468133247968080