Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq18352 145 8e-30 seq39894 136 4e-27 seq2470 136 4e-27 seq38187 98.7 1e-15 seq47140 95.1 1e-14 seq62430 89.7 5e-13 seq37113 82.4 8e-11 >seq18352 Length=35742 Score = 145 bits (160), Expect = 8e-30 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||||||| || | ||| || || | || ||||||||||||||||| || || | Sbjct 19305 CCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTC--TG 19248 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || | | || | ||||||||| || || || || | |||| |||||||||||| || | Sbjct 19247 ATAGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCG 19188 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCC 139714 |||| |||||||| || ||| |||| | |||| | || || || ||||| | || || Sbjct 19187 GTATACCTTCTTTATCC-TGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCA 19129 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||| || || ||||||||||||||||| || ||||| Sbjct 19128 ACCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCAT 19079 Score = 141 bits (156), Expect = 9e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| || || | ||||| || || || | |||||| |||||||| ||||||||||| Sbjct 20449 ATTGCCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATC 20390 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | || || |||||||||||||| ||||| | || ||||||||||||||||| Sbjct 20389 CGAAAGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGG 20330 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 ||| ||||||||||| || ||| |||| | || | | ||| | || ||| | |||| Sbjct 20329 AGGAATGCCTTCTTTATC-TTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCT 20271 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| | || | || || |||||||| ||||| ||||| || ||||| Sbjct 20270 CGACCTCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 20219 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | ||| || || | |||||| || ||||| ||||| || || Sbjct 20217 CCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAA 20158 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||||||||||||| || || | || | ||||||||| || |||||| Sbjct 20157 AGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGT 20098 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || |||||| || | | ||| | ||||| ||||||| || Sbjct 20097 ATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACT 20038 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||| ||||| || || ||||||||||| |||||||| Sbjct 20037 TCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | || || || | || || |||||||||||||| ||||| | Sbjct 19989 CCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGAC 19930 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||||||| |||||||| || | || ||||||||||| || ||||| Sbjct 19929 AATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGG 19870 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || ||||| || |||||| || | | ||| | ||||| ||||||| || Sbjct 19869 ATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACT 19810 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | || |||||||| || ||||| ||||| ||||||||| || Sbjct 19809 TCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCATACCT 19759 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || || ||||||||||||||||| || Sbjct 19533 CCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAA 19474 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||||| ||||| || || | || ||||||||||| ||||| || Sbjct 19473 AGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGA 19414 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| |||||| || | | ||| | |||||| |||| || || Sbjct 19413 ATTCCCTCTTTGTC-TTGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGAC 19355 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | ||| ||||| ||||| || || ||||| ||||||||| || Sbjct 19354 TTCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCATACCT 19303 >seq39894 Length=23042 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || || || |||| ||||| || |||||||| ||||||||||| Sbjct 12016 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12075 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||| || || |||||| | ||||||||| || || Sbjct 12076 AGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGA 12135 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| |||||| |||| | | ||| | || |||| ||||| || Sbjct 12136 ATGCCTTCTTTGTC-CTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGAC 12194 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||||||||| | ||||| ||||| ||||||||| Sbjct 12195 TTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATA 12243 Score = 125 bits (138), Expect = 7e-24 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || || || |||| ||||| || |||||||| ||||||||||| Sbjct 12472 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12531 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | |||| |||||| | ||||| || ||| |||||| ||||| ||||| || | Sbjct 12532 A--GAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTG 12589 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | |||||||||||||| ||| |||||| ||||| | ||| | || |||| || || Sbjct 12590 GAATGCCTTCTTTGTC-CTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCG 12648 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | || || || || | ||||||||| || || |||||| Sbjct 12649 ACTTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCATA 12699 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || || ||||||| || |||||||| ||||| |||||||| ||| Sbjct 11560 CCACCACGAAGACGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTC 11619 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | |||||||| || |||| | |||||||| ||||| || Sbjct 11620 AAGGTACGGCCGTCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGG 11679 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||||| ||||| | ||| | || || | || || || Sbjct 11680 ATGCCTTCTTTATCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACT 11739 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || ||||| | ||||||||||| || |||||| Sbjct 11740 TCCAAAGTGATGGTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCATA 11787 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| || ||||| ||||| | ||| | || || ||||||||||| Sbjct 12274 GTTGATTCCTTTTGGATATTATAGTCGCTGAGTGTACGACCATCCTCAAGCTGTTTACCG 12333 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | |||| ||||| || ||||| || || ||||| || || ||| |||| | ||| Sbjct 12334 GCGAAAATCAATCGTTGTTGGTCGGGTGGGATACCTTCCTTATC-TTGAATTTTGGCTTT 12392 Query 139688 AGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | |||| || | ||||||| || || || || | || | ||| || || ||||| | Sbjct 12393 CAC-GTTCTCAATCGTGTCGGATGGTTCGACTTCTAACGTAATCGTTTTTCCTGTCAATG 12451 Query 139746 TTTTTACGAATATTTGCAT 139764 |||||||||| |||||||| Sbjct 12452 TTTTTACGAAAATTTGCAT 12470 >seq2470 Length=523 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || || || |||| || || ||||||||||| ||||||||||| Sbjct 235 CCACCGCGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTG 294 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||| || || |||||| | ||||||||| || || Sbjct 295 AGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGA 354 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| |||||| |||| | | ||| | || |||| ||||| || Sbjct 355 ATGCCTTCTTTGTC-CTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGAC 413 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||||||||| | ||||| ||||| ||||||||| Sbjct 414 TTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATA 462 >seq38187 Length=9425 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| || || || |||| || || ||||||||||||||||||||||||| || | Sbjct 3201 ACGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCC 3142 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| | |||||||| || |||| | ||||| ||||| || || || |||||||| Sbjct 3141 GTCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTT 3082 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||||| || | | ||| | || ||| ||||| || | | || | Sbjct 3081 ATCCTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGAT 3022 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || ||||| | |||||| ||||| ||||||||| Sbjct 3021 TGTTTTACCGGTTAGCGTTTTAACGAAAATTTGCATA 2985 >seq47140 Length=38879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 52521 AGACTTGATACTCAACGCTTTTGA--CAATGTTCCGTGTGTGCGCAAAAAGGATGATTGG 52578 ||| || || |||||||| | || ||||| || || ||| | ||| | |||||| Sbjct 14502 AGATTTCCTATTCAACGCTATCGAAACAATG--CCTTGCGTGAAGAGAAAAGCAGATTGG 14559 Query 52579 GCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCT 52638 ||||||| |||||| | || | || || ||||||| ||| | | | |||||||| Sbjct 14560 GCATTGAGATGGATAGCTGACCAAAACGCTACTTTTGGAGAAAGGATAATAGCGTTTGCA 14619 Query 52639 ATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTG 52698 || ||||| | || |||||||| ||||||||||| ||||||| |||| | Sbjct 14620 GCTGTCGAAGGAATCTTCTTTTCGGGAAGTTTTGCGGCGATATTTTGGCTCAAGAAGAGA 14679 Query 52699 GGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAA 52753 || | ||||| || | || || || || || || |||||| | ||||||| || Sbjct 14680 GGTCTTATGCCTGGATTGACTTTCAGTAATGAATTAATATCGAGAGACGAAGTAA 14734 >seq62430 Length=23789 Score = 89.7 bits (98), Expect = 5e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||| || || ||||| || | |||||| |||||||| || || |||||| Sbjct 14420 GCCACCTCTTAATCGTAATACTAAATGCAACGTAGATTCTTTTTGGATATTGTAATCGGA 14361 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || | || | |||||||| ||||||||||| | |||| |||||| ||||| |||| Sbjct 14360 AAGAGTTCGTCCA-TCTTCGAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCAGGAG 14302 Query 139656 GTATGCCT 139663 | || ||| Sbjct 14301 GAATACCT 14294 >seq37113 Length=2419 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| ||||| || | || || |||||||| ||||| |||||| Sbjct 656 CCACCTCTCAATCTCAATACTAAATGCAAAGTCGATTCTTTTTGGATGTTGTAATCGGAA 715 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | |||||||| |||||||| || | |||| |||||||||||| ||||| Sbjct 716 AGGGTACGTCCA-TCTTCGAGTTGTTTACCGGCGAAAATCAAACGTTGCTGATCAGGAGG 774 Query 139657 TATGCCT 139663 |||||| Sbjct 775 AATGCCT 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495649433114400