Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq24804 154 2e-32 seq47140 138 2e-27 seq28943 113 6e-20 seq7785 105 1e-17 >seq24804 Length=9356 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 50212 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 ||| || ||| ||||| ||||| |||||||| | |||||||||||| ||||| | || Sbjct 6701 TCAGTAGGATCCTTAACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTC 6642 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 ||||| | || ||||||||||||||| |||| || || | ||| || |||||| | | Sbjct 6641 TCAATAGTGATTTGAAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAG 6582 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 || ||||| ||| ||||||||| || || || ||| ||| || ||||| || || || Sbjct 6581 AAACGTTCGACTAGATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACG 6522 Query 50392 TGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 ||| ||||| | ||||| | |||| | ||||| | |||||| ||| ||| Sbjct 6521 TGTGAAATAAATTTCTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATC 6469 Score = 140 bits (154), Expect = 5e-28 Identities = 167/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 |||||||| || ||||| || || || | ||| ||||||||||| |||||||| Sbjct 6999 TCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTG 6940 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||| | ||||| |||||||||||||| ||||| || || ||||| || Sbjct 6939 AGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACGCT 6880 Query 50104 ACAAGTCTCTCTCCATAACTGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 50160 | | ||| |||||| || ||||| | ||| ||||| || |||||||||| || Sbjct 6879 ATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTGCT 6820 Query 50161 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 ||| | || ||||||||||| ||||| || || || || | | ||| Sbjct 6819 TTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATAAAAAGT 6774 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 ||||| || || || ||||| ||||| || ||||| | ||||| ||||||||| || | Sbjct 7263 AATCTGTCGGCCACGAATTCAATATAGGTCTTCATTAATTCACTATTCATTCCGATCATC 7204 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 ||||| | ||| | || | ||||||||||||||| || || || ||||| Sbjct 7203 GATACTGGTAAAGCGTCGGTTAAAAATTCTTGTTCAATTATGACAGCGTCGCGAATAATT 7144 Query 49909 GATCTAACGGTTTCTT---CACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 49965 ||| |||||| |||| ||| || | ||||||||| |||||||||||||| Sbjct 7143 TCGGTAA---TTTCTTCAACACTGGGTTTTTGAACTAAATGTTTGAACATCAAACATGCA 7087 Query 49966 AAATCGCAGTGCAGACCCT 49984 |||||| |||| ||||| Sbjct 7086 AAATCGGTATGCAAACCCT 7068 >seq47140 Length=38879 Score = 138 bits (152), Expect = 2e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 ||||| || |||||||||||||| | || |||||||||||||| | |||||||| | Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 || |||||||||||||| ||| || || | ||| || || ||| | | || ||||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 50400 ||||||| ||||| || || || || ||||| |||||||||||||| || || Sbjct 14298 ACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATG 14239 Query 50401 AAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 || | ||||| | ||| | ||||| | |||||| ||| ||| Sbjct 14238 AACTTCTTTTCTTCTGGTTTCAGTTTCTCCCAATCTCTGAAATC 14195 Score = 104 bits (114), Expect = 3e-17 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 |||||||| |||| ||| || || || | ||| ||||| || || | ||| || Sbjct 14729 TCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTG 14670 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||| | |||||| || ||||||||||||||||| || || ||||| || Sbjct 14669 AGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACGCT 14610 Query 50104 ACAAGTCTCTCTCCATAACTGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 50160 | | || |||||| || | ||| | |||| |||||| | |||||||| || Sbjct 14609 ATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTGCT 14550 Query 50161 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 || | || || |||||||| ||||| || || || || || Sbjct 14549 TTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATAG 14509 >seq28943 Length=35018 Score = 113 bits (124), Expect = 6e-20 Identities = 126/166 (76%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 80352 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 80411 |||||||||||| ||||| || || |||| || | || ||| || || ||||| |||| Sbjct 14949 GGTAGGAGAAGCATGCGTGAAGTATCTTTCGGATAATAAATTATAGGTTTCAATCGCTGC 15008 Query 80412 TTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTT 80470 || ||||| || | |||||||| || || || | ||| ||||||||||| |||| || Sbjct 15009 GTCGATATCTTCACCG-TGAATTCCGACAGCAACTCTCATCAACATGTGCTGTGGTCGTT 15067 Query 80471 CAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 |||| | ||| ||||||||||| || || || ||||| ||||| Sbjct 15068 CAACCACCTTTCCGTTTATTTTCAATAAATACGACTTTTCTAAAGT 15113 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| || |||||||| || || |||| | ||| || ||||| ||||||||||| | Sbjct 13240 TACCTGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAA 13299 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||| |||||||| |||||||||||||| || || || ||||||||||| | | | Sbjct 13300 AGATTCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAG 13359 Query 79179 ACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATC 79238 |||||| | ||| ||| | | ||||| ||||| | | |||| ||||| | | Sbjct 13360 TGAATTTCTGACACCATATTGTTTTATTTTTTCTTTCAACGCAGCCCAGTCCCATAACTT 13419 Query 79239 AGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 || || ||||||||| | ||| || || | ||| Sbjct 13420 GGAGGGAGTAACATTCCACATATCGTACTGCAAAAT 13455 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||| || || | ||||||| || ||||||||||||||||| ||||| ||| Sbjct 14063 ATTTCGGTACATAAATTACTACTTTTGATGGTTCCTAAATTTTGGTGATTTGATTTTCGA 14122 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || || ||||| ||||| | ||| | ||||| || |||||||||||||| |||| ||| Sbjct 14123 TTGCAGGCATCTTTATATAACATGTAAGGAGTTCCTGTTTCAATCTGAGAGTCTAAAATT 14182 Query 79789 GC 79790 || Sbjct 14183 GC 14184 >seq7785 Length=64017 Score = 105 bits (116), Expect = 1e-17 Identities = 136/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||| || || Sbjct 9368 GCATTAAATAAAGTAGGGGAAGCATGTGTAAAATATTTTAGAGACATTAAATTATAAGTT 9427 Query 80401 TCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 |||||| || || ||||| |||| |||| || || | ||| ||||||||||| Sbjct 9428 TCAATAATCGAGTCAATATCTTCACCATGGATG----CCAACAGAGACCCGCATTAACAT 9483 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||| || || | ||| || | || || |||||||| || || || |||||||| || Sbjct 9484 GTGTTGGGGACGTTCGACAACACGGTCGTTGATTTTCAATAAATAGGACTTTTCCAATGT 9543 Query 80517 TTTAAAA 80523 | |||| Sbjct 9544 CTGAAAA 9550 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 ||||||| || |||||||| | || || | || |||||| || || ||||||| Sbjct 7320 TCCATCCATAAAAATGCATCGATGAAAGATTCGCGTACGACGGATCAGCAATGTGGATAT 7379 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| | ||| ||||||||||| || || || || ||||||||||| | || |||| Sbjct 7380 TCAAACTTTGTGACTGATCGATGAACGCACCTCTATCGGCAGCCATTTTCAAAATGGTCT 7439 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAA 78934 | ||| ||||||||||| ||||||||||| Sbjct 7440 TCTGTTTAATTTCCCAAACAGTTTTATAAA 7469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717668533785480