Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq24804 125 7e-24 seq47140 109 5e-19 >seq24804 Length=9356 Score = 125 bits (138), Expect = 7e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 13908 ATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13965 || ||||| || ||||| || ||||| ||||| | ||||| ||||| | |||||||| Sbjct 6987 ATCAGTTCATTACTGAAA--GTCAATCCAGGCATTAGGCCTCGCTTTTTGAGCCAAAATA 6930 Query 13966 TTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14025 |||| ||||| || |||||||| || || || || || ||||||||||| | || || Sbjct 6929 TTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACGCTATGATTCTTT 6870 Query 14026 CTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14085 ||||||| | || |||| | | |||||||| |||||| || | ||| | || | Sbjct 6869 CTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTGCTTTCCTCTTGA 6810 Query 14086 TAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 | || ||| ||||||||||| || |||||| Sbjct 6809 CACAAGGCATGGTTTCAATAGCGTTGAATAAA 6778 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 || ||| || || || | ||| ||||||||||| || |||| || || |||| || || Sbjct 6687 AACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTG 6628 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAA 14260 ||| || || || |||| ||||| | ||| ||||| | || | |||| | | Sbjct 6627 AAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAG 6568 Query 14261 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14320 |||||||||||| ||||||||| || || |||||||| || | || | |||||| | Sbjct 6567 ATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAATAAATTT 6508 Query 14321 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATC 14371 | ||||| || ||||| | |||||| |||||| || ||| ||| Sbjct 6507 CTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATCC-TAAAAATATC 6458 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 13522 ACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAA--TAACGCCCAT 13579 |||||||||| | |||||| || | || ||| | ||| |||| |||| || | Sbjct 7503 ACTAAAAATCGGCGTCTAATTTGAATTCGTTTTCGCCA--GTTGGAAACATAACTCCACT 7446 Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| | ||| || | |||||| || |||||||| || |||||||| | ||| || || || Sbjct 7445 TTTCTTATACTCGCCAACTCTCTTCTCAAAGAAATTCGTTTTACCGTTCAGGGAAATGTT 7386 Query 13640 TTCCATAAAATCAAATGGATT 13660 |||||||||||| || || || Sbjct 7385 TTCCATAAAATCGAAAGGGTT 7365 >seq47140 Length=38879 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 || || ||||| ||||| | |||| || || | ||||||||| || ||||| || Sbjct 14702 AAAGTCAATCCAGGCATAAGACCTCTCTTCTTGAGCCAAAATATCGCCGCAAAACTTCCC 14643 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 |||||||| ||||| || || || ||||||||||||| | ||||||||| | || ||| Sbjct 14642 GAAAAGAAGATTCCTTCGACAGCTGCAAACGCTATTATCCTTTCTCCAAAAGTAGCGTTT 14583 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 | || | ||||||| | ||||| || | |||| | || | || ||||||||| Sbjct 14582 TGGTCAGCTATCCATCTCAATGCCCAATCTGCTTTTCTCTTCACGCAAGGCATTGTTTCG 14523 Query 14103 ATAGCATTAAATA 14115 ||||| || |||| Sbjct 14522 ATAGCGTTGAATA 14510 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 13508 AATATTCAATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGA 13567 || ||| || |||| |||||||| |||| ||| ||| |||| ||| || | | Sbjct 15258 AAAATTAAAGGAAAATTAAAAATCGGCATCCAATTTAAATTCATTTTCGCCTGAGGGGAA 15199 Query 13568 AATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTC 13627 || || || |||| | ||||| | |||||| || |||||||| || |||||||| | Sbjct 15198 CATGACTCCACTTTTCTTGTATTCTCCAACTCTCTTCTCAAAGAAATTCGTTTTACCATT 15139 Query 13628 CAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || |||||||||||||||||||| ||||| ||| Sbjct 15138 CAAGGATATATTTTCCATAAAATCGAATGGGTTT 15105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479327085313800