Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq24804 120 3e-22 seq47140 114 1e-20 >seq24804 Length=9356 Score = 120 bits (132), Expect = 3e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 13696 ATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13753 || ||||| || ||||| || ||||| ||||| | ||||| ||||| | |||||||| Sbjct 6987 ATCAGTTCATTACTGAAA--GTCAATCCAGGCATTAGGCCTCGCTTTTTGAGCCAAAATA 6930 Query 13754 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTT 13813 |||| || || ||| |||||||| || || || || || ||||||||||| | || || Sbjct 6929 TTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACGCTATGATTCTTT 6870 Query 13814 CTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873 ||||||| | || |||| | | |||||||| |||||| || | ||| | || | Sbjct 6869 CTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTGCTTTCCTCTTGA 6810 Query 13874 TAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 | || ||| ||||| || || ||||||||| Sbjct 6809 CACAAGGCATGGTTTCAATAGCGTTGAATAAA 6778 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 || ||| || || || | ||| ||||||||||| || |||| || || |||| || || Sbjct 6687 AACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTG 6628 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048 ||| || || ||| |||| ||||| | ||| || || | || | ||| | | Sbjct 6627 AAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAG 6568 Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 ||||||||||| ||||||||| || || |||||||| || | || | |||||| | Sbjct 6567 ATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAATAAATTT 6508 Query 14109 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATC 14159 | ||||| || ||||| | |||||| |||||| || ||| ||| Sbjct 6507 CTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATCC-TAAAAATATC 6458 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 13310 ACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAA--TAACGCCCAT 13367 |||||||||| | |||||| || | || ||| | ||| |||| |||| || | Sbjct 7503 ACTAAAAATCGGCGTCTAATTTGAATTCGTTTTCGCCA--GTTGGAAACATAACTCCACT 7446 Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| | ||| || | |||||| || ||||| || || |||||||| | ||| || || || Sbjct 7445 TTTCTTATACTCGCCAACTCTCTTCTCAAAGAAATTCGTTTTACCGTTCAGGGAAATGTT 7386 Query 13428 TTCCATAAAATCGAATGGATT 13448 ||||||||||||||| || || Sbjct 7385 TTCCATAAAATCGAAAGGGTT 7365 >seq47140 Length=38879 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770 || || ||||| ||||| | |||| || || | ||||||||| || || || ||| Sbjct 14702 AAAGTCAATCCAGGCATAAGACCTCTCTTCTTGAGCCAAAATATCGCCGCAAAACTTCCC 14643 Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830 |||||||| ||||| || || || ||||||||||||| | ||||||||| | || ||| Sbjct 14642 GAAAAGAAGATTCCTTCGACAGCTGCAAACGCTATTATCCTTTCTCCAAAAGTAGCGTTT 14583 Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890 | || | ||||||| | ||||| || | |||| | || | || |||||||||| Sbjct 14582 TGGTCAGCTATCCATCTCAATGCCCAATCTGCTTTTCTCTTCACGCAAGGCATTGTTTCG 14523 Query 13891 ATTGCATTGAATA 13903 || || ||||||| Sbjct 14522 ATAGCGTTGAATA 14510 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 13296 AATATTTAATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGA 13355 || ||| || |||| |||||||| |||| ||| ||| |||| ||| || | | Sbjct 15258 AAAATTAAAGGAAAATTAAAAATCGGCATCCAATTTAAATTCATTTTCGCCTGAGGGGAA 15199 Query 13356 AATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTC 13415 || || || |||| | ||||| | |||||| || ||||| || || |||||||| | Sbjct 15198 CATGACTCCACTTTTCTTGTATTCTCCAACTCTCTTCTCAAAGAAATTCGTTTTACCATT 15139 Query 13416 CAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || |||||||||||||||||||||||||| ||| Sbjct 15138 CAAGGATATATTTTCCATAAAATCGAATGGGTTT 15105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478188837357480