Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq38187 118 8e-22 seq39894 109 4e-19 seq2470 109 4e-19 seq18352 102 6e-17 >seq38187 Length=9425 Score = 118 bits (130), Expect = 8e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 |||||||||||| | ||| || ||||| | || |||||| ||| ||||| |||| Sbjct 3198 TAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCGTC 3139 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 | ||||||||| ||||| || || ||||| |||||||| | || | ||||||||| || Sbjct 3138 TTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTATC 3079 Query 43017 GCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075 ||| || | ||||| | ||| || |||| | |||||| | | || || | Sbjct 3078 -CTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGATTG 3020 Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| |||||||| ||||| || ||||||||||| Sbjct 3019 TTTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 >seq39894 Length=23042 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| ||||| || |||||||| | ||| || ||| ||||||||| | || ||| Sbjct 11806 ACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCC 11865 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||||||||| ||||| |||| ||||| || | || | |||||| || || Sbjct 11866 AATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCTTGA 11925 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||||| | || || || | ||| ||||||||| Sbjct 11926 ATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTACTTCCAACGTAATAGTTTTT 11985 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || ||||| || |||||||||||| Sbjct 11986 CCTGTGAGCGTTTTTACGAAAATTTGCATT 12015 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | ||| |||||||| | ||| |||||||| | ||| |||||| Sbjct 12472 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12531 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| ||||||||||| |||||||| |||||||| |||||||| | || Sbjct 12532 AGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGA 12591 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| || |||| || | | | || ||| | ||||| Sbjct 12592 ATGCCTTCTTTGTC-CTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGAC 12650 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || || ||||| |||||||| ||||| Sbjct 12651 TTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||||||||| || | ||| ||| || || | ||| ||||| | Sbjct 11560 CCACCACGAAGACGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTC 11619 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| ||||||||||| ||||| || || ||||| || || |||| || Sbjct 11620 AAGGTACGGCCGTCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGG 11679 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || | |||| || | | | || || | ||||| Sbjct 11680 ATGCCTTCTTTATCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACT 11739 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| |||||||| || ||||| ||||| Sbjct 11740 TCCAAAGTGATGGTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| ||||| || |||||||| | ||| || ||| | |||||| | || || Sbjct 12262 ACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTGAGTGTACGACCATCCTCA 12321 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||| ||||||||||| ||||| |||| || | |||||| || || Sbjct 12322 AGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGGATACCTTCCTTATCTTGA 12381 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||||| | ||||| |||| ||| || |||||| Sbjct 12382 ATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGACTTCTAACGTAATCGTTTTT 12441 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || | ||||| || |||||||||||| Sbjct 12442 CCTGTCAATGTTTTTACGAAAATTTGCATT 12471 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| ||||| || |||||||| | ||| || ||| ||| ||||| | || ||| Sbjct 12718 ACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTCAACGTACGGCCATCTTCC 12777 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||||||||| ||||| |||| ||||| || | || | |||||| || || | Sbjct 12778 AATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCCTGG 12837 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | | | |||||| | |||||| || | || || || || Sbjct 12838 ATTTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACCTCCAAAGTGATGGTCTTG 12897 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 ||||| |||||||| || || || ||||| || Sbjct 12898 CCGGTGAGAGTTTTAACGAAGATCTGCATCTT 12929 >seq2470 Length=523 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| ||||| || |||||||| | ||| || ||| ||||||||| | || ||| Sbjct 25 ACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCC 84 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||||||||| ||||| |||| ||||| || | || | |||||| || || Sbjct 85 AATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCTTGA 144 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||||| | || || || | || ||||||||| Sbjct 145 ATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCACTTCCAATGTAATAGTTTTT 204 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| || ||||| || |||||||||||| Sbjct 205 CCGGTGAGCGTTTTTACGAAAATTTGCATT 234 >seq18352 Length=35742 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| |||| || ||||| | ||||| ||||| | || | | |||| || Sbjct 19743 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCTTCG 19684 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| ||||| || || | || ||||| || | || | |||||| || || ||| Sbjct 19683 AGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTC-CTG 19625 Query 43021 A-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 | | | ||||| | ||| ||||||| | ||||| || | ||| |||||||| Sbjct 19624 AATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTTTT 19565 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||| |||||||| ||||||||||| Sbjct 19564 ACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| | | | |||||||| | || || ||||| | |||||||| ||| Sbjct 19989 CCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGAC 19930 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || |||| || | |||||| ||||| ||||| | || || || || | || Sbjct 19929 AATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGG 19870 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || ||| | ||||| | | | ||||| | | ||| || Sbjct 19869 ATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACT 19810 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||||| |||||| || ||||||||||| Sbjct 19809 TCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381058852541706