Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq24804 145 1e-29 seq47140 129 8e-25 seq7785 105 9e-18 seq28943 104 3e-17 >seq24804 Length=9356 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 ||| || ||| ||||| || || |||||||| | |||||||||||||||||| | || Sbjct 6701 TCAGTAGGATCCTTAACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTC 6642 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 ||||| | || ||||||||||||||| ||||||| || | || || |||||| | | Sbjct 6641 TCAATAGTGATTTGAAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAG 6582 Query 42437 AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 42496 || ||||| ||| |||||| || || || || ||| ||| || ||||| || || || Sbjct 6581 AAACGTTCGACTAGATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACG 6522 Query 42497 TGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 ||| ||||| | ||||| || ||| | | ||| | |||||| ||| ||| Sbjct 6521 TGTGAAATAAATTTCTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATC 6469 Score = 136 bits (150), Expect = 5e-27 Identities = 150/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | ||| ||||||||||| |||||||| ||||||||||| | ||||| |||| Sbjct 6972 AAAGTCAATCCAGGCATTAGGCCTCGCTTTTTGAGCCAAAATATTGCGGCAAAACTTCCA 6913 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234 ||||||||||| ||||| || || ||||| || || | ||| |||||| || ||| | Sbjct 6912 GAAAAGAAGATACCTTCGACAGCTGCAAACGCTATGATTCTTTCTCCAAAAGTGGCGTTT 6853 Query 42235 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 ||| ||||| || |||||||||| || ||| | || ||||||||||| ||||| Sbjct 6852 TGATCAGCAATCCATTTCAGAGCCCAATCTGCTTTCCTCTTGACACAAGGCATGGTTTCA 6793 Query 42293 ATGGCATTAAAGAGATAGT 42311 || || || || | | ||| Sbjct 6792 ATAGCGTTGAATAAAAAGT 6774 Score = 102 bits (112), Expect = 1e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 ||||| || || | |||||| ||||| || ||||| | ||||| ||||||||| || | Sbjct 7263 AATCTGTCGGCCACGAATTCAATATAGGTCTTCATTAATTCACTATTCATTCCGATCATC 7204 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 ||||| | ||| | || | ||||||||||||||| ||| ||||| ||||| Sbjct 7203 GATACTGGTAAAGCGTCGGTTAAAAATTCTTGTTCAATTATGACAGCGTCGCGAATAATT 7144 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073 | | | ||| |||| ||| | | ||||||||| |||||||||||||| ||| Sbjct 7143 TCGGTAATTTCTTCAACACTGGGTTTTTGAACTAAATGTTTGAACATCAAACATGCAAAA 7084 Query 42074 TCGCAGTGCAGACCCT 42089 ||| |||| ||||| Sbjct 7083 TCGGTATGCAAACCCT 7068 >seq47140 Length=38879 Score = 129 bits (142), Expect = 8e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||| || || ||||||||||| | || |||||||| ||||| | |||||||| | Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 || |||||||||||||| ||| ||| || | || ||||| ||| | | || ||||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 ||||||| || || || || || || ||||| |||||||||||||| || || Sbjct 14298 ACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATG 14239 Query 42506 AAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 || | ||||| || ||| | | ||| | |||||| ||| ||| Sbjct 14238 AACTTCTTTTCTTCTGGTTTCAGTTTCTCCCAATCTCTGAAATC 14195 Score = 105 bits (116), Expect = 9e-18 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 42101 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATA 42160 |||||||| || || || | ||| ||||| || || | ||| || ||||||||||| Sbjct 14717 ATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTGAGCCAAAATATC 14658 Query 42161 GACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 42220 | |||||| ||| ||||||||||||||||| || || ||||| || || | || ||| Sbjct 14657 GCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACGCTATTATCCTTTCT 14598 Query 42221 CCATAACCGGCACT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 42277 ||| || || | |||| |||||| | |||||||| || || | || || Sbjct 14597 CCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTGCTTTTCTCTTCACG 14538 Query 42278 CAAGGCATCGTTTCTATGGCATTAAAGAG 42306 |||||||| ||||| || || || || || Sbjct 14537 CAAGGCATTGTTTCGATAGCGTTGAATAG 14509 >seq7785 Length=64017 Score = 105 bits (116), Expect = 9e-18 Identities = 136/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483 ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||| || || Sbjct 9368 GCATTAAATAAAGTAGGGGAAGCATGTGTAAAATATTTTAGAGACATTAAATTATAAGTT 9427 Query 72484 TCAATAGCTGATTCTATATC----CCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 |||||| || || ||||| |||| |||| || || | ||| ||||||||||| Sbjct 9428 TCAATAATCGAGTCAATATCTTCACCATGGATG----CCAACAGAGACCCGCATTAACAT 9483 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 || || || | ||| || | || || |||||||| || ||||| |||||||| || Sbjct 9484 GTGTTGGGGACGTTCGACAACACGGTCGTTGATTTTCAATAAATAGGACTTTTCCAATGT 9543 Query 72600 TTTAAAA 72606 | |||| Sbjct 9544 CTGAAAA 9550 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||||| ||||||||||| | || || | || ||||| || ||||| |||| Sbjct 7320 TCCATCCATAAAAATGCATCGATGAAAGATTCGCGTACGACGGATCAGCAATGTGGATAT 7379 Query 70928 TCATCGACT----GACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATC 70983 ||| ||| |||| |||||||||| || || || || ||||||||||| | || Sbjct 7380 TCAA--ACTTTGTGACT--GATCGATGAACGCACCTCTATCGGCAGCCATTTTCAAAATG 7435 Query 70984 GTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA 71017 ||||| ||| ||||||||||| ||||||||||| Sbjct 7436 GTCTTCTGTTTAATTTCCCAAACAGTTTTATAAA 7469 >seq28943 Length=35018 Score = 104 bits (114), Expect = 3e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 72435 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 72494 |||||||||||| ||||| || || |||| || | || ||| || || ||||| |||| Sbjct 14949 GGTAGGAGAAGCATGCGTGAAGTATCTTTCGGATAATAAATTATAGGTTTCAATCGCTGC 15008 Query 72495 TTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTT 72553 || ||||| || | || ||||| || || || | ||| ||||| ||||| |||| || Sbjct 15009 GTCGATATCTTCACCG-TGAATTCCGACAGCAACTCTCATCAACATGTGCTGTGGTCGTT 15067 Query 72554 CAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 |||| | ||| ||||||||||| || || || ||||| ||||| Sbjct 15068 CAACCACCTTTCCGTTTATTTTCAATAAATACGACTTTTCTAAAGT 15113 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| || |||||||| || || |||| | ||| || ||||| ||||| ||||| | Sbjct 13240 TACCTGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAA 13299 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 || || |||||||| |||||||||||||| || ||||| ||||||||||| | | || Sbjct 13300 AGATTCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAG 13359 Query 71262 ACTATTTCTAAGACCATGTGATCGGATTTTATCTTT 71297 |||||| | ||||| | | ||||| ||||| Sbjct 13360 TGAATTTCTGACACCATATTGTTTTATTTTTTCTTT 13395 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 ||||| || || | |||||||| |||||||||||||||||||| ||||| ||| Sbjct 14063 ATTTCGGTACATAAATTACTACTTTTGATGGTTCCTAAATTTTGGTGATTTGATTTTCGA 14122 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 71871 || || ||||| ||||| | || | ||||| || |||||||||||||| |||| ||| Sbjct 14123 TTGCAGGCATCTTTATATAACATGTAAGGAGTTCCTGTTTCAATCTGAGAGTCTAAAATT 14182 Query 71872 GC 71873 || Sbjct 14183 GC 14184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670578320581320