Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq47140 107 3e-18 seq7785 95.1 2e-14 seq24804 93.3 6e-14 >seq47140 Length=38879 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || || || || || |||||||||||||| ||||||||||| || ||||||||| Sbjct 14611 GCGTTTGCAGCTGTCGAAGGAATCTTCTTTTCGGGAAGTTTTGCGGCGATATTTTGGCTC 14670 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 |||||| | || || ||||| ||| |||| |||||| || || ||||| ||||||| Sbjct 14671 AAGAAGAGAGGTCTTATGCCTGGATTGACTTTCAGTAATGAATTAATATCGAGAGACGA 14729 Score = 89.7 bits (98), Expect = 8e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 125128 AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC 125187 |||| || |||||| | ||||| || || || | |||||||| ||||| || || ||| Sbjct 14235 AGTTCATTTCGCACGTATTGGCGTTTTTCGCAGCGTCCGATGGTATCGTTAATGAGAATT 14294 Query 125188 T-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTC 125246 | || || ||| |||| ||||||| | ||||| || | | ||| |||||||| Sbjct 14295 TAGTCGA-ACGTTTCTTTCAAGAGGTACAAATTCCTGAAGCCCGATTCTTCTACGGATTT 14353 Query 125247 CAAATCATGATTGAGAACGTGCACTCGGAAATGTAC 125282 ||||||| ||||| || || || |||||||||||| Sbjct 14354 CAAATCACTATTGAAAATGTACATTCGGAAATGTAC 14389 >seq7785 Length=64017 Score = 95.1 bits (104), Expect = 2e-14 Identities = 231/342 (68%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||||| || || || ||||||||||| ||||| || | || | |||| |||| Sbjct 36925 GGTGATCTCGGTCCTGTTTACGGATTCCAATGGAGACATTTCGGAGCTGAGTACAAAGAC 36984 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT 70185 ||| | || || || || | || || |||||| | || | |||| || || | Sbjct 36985 ATGC-ACACCGATTACACGAACAAAGGAGTGGATCAACTACAAAACGTCATAGATACCAT 37043 Query 70186 CAAGACCAATCCA-ACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || || ||| || | ||| | || | | || | ||||| ||| |||||| | Sbjct 37044 TAGGAATAACCCAGACTG-TAGACGAATAATCTTATGTGCGTGGAACCCTCTAGATTTAC 37102 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTC-GTACGATGGCAAA 70303 ||||||| |||| || ||||| || || | ||||||||| | ||| | || || Sbjct 37103 CTAAAATGGCCTTACCTCCTTGTCATTGCTTAGTACAGTTTTACGCAGTAA-ACGGTGAA 37161 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||||||| |||||||||| | ||| || ||||| | || ||||| || || || Sbjct 37162 TTGTCATGCCAAATGTATCAGCGTTCTGCTGATATGGGTTTAGGCGTACCATTCAATATC 37221 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACC 70405 || || || || || | || ||||||| |||||| | ||| Sbjct 37222 GCTAGTTACTCCTTGCTCACTTACATGATCGCTCACGTCACC 37263 >seq24804 Length=9356 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || || || || || ||||||||||| || |||||||| || || ||||||||| Sbjct 6881 GCGTTTGCAGCTGTCGAAGGTATCTTCTTTTCTGGAAGTTTTGCCGCAATATTTTGGCTC 6940 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 || ||||| || || ||||| ||| |||| |||||| || | ||||| ||||||| Sbjct 6941 AAAAAGCGAGGCCTAATGCCTGGATTGACTTTCAGTAATGAACTGATATCAAGAGACGA 6999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740439887563320