Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq39894 127 1e-24 seq18352 125 5e-24 seq27679 109 3e-19 seq2470 96.9 2e-15 >seq39894 Length=23042 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || |||||||| || | ||| |||||||| || ||||| |||||| ||| | | | Sbjct 11572 CGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCCG 11631 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || || || ||||| ||||||||||| | || ||||||||||| Sbjct 11632 TCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTA 11691 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || || | |||||| ||| ||||| || |||| || |||| ||| || Sbjct 11692 TCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATG 11751 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || ||||||||||||||||| ||||| Sbjct 11752 GTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || |||||||| | || || || ||||| ||||| ||||| | | | | | Sbjct 12484 CGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACCG 12543 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| ||||| ||| || || ||||| || || | || ||||||||||| Sbjct 12544 TCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTTG 12603 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| ||||| ||| |||| || |||| ||| || Sbjct 12604 TCCTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGATG 12663 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || |||||||| ||||| ||||| Sbjct 12664 GTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | |||||| | |||| ||| | || || || ||||| ||||| || || Sbjct 11787 ACCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCT 11846 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || |||||||| || || || ||||| | ||| ||||||| || Sbjct 11847 CAATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGG 11906 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| ||| || ||| |||||||||| |||| || Sbjct 11907 GATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTAC 11966 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || |||||||| || || |||||||||||||||||||| Sbjct 11967 TTCCAACGTAATAGTTTTTCCTGTGAGCGTTTTTACGAAAATTTGCAT 12014 >seq18352 Length=35742 Score = 125 bits (138), Expect = 5e-24 Identities = 169/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| ||| || | |||||||| || |||||||||||||| || ||||| || || Sbjct 19306 ACCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGA 19247 Query 33202 CAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | | ||| ||| || | ||||||||| || || ||||||||||| || | Sbjct 19246 TA----GGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTG 19191 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 ||||| |||||||| || ||| | ||| || ||| ||| |||||| | |||| Sbjct 19190 GCGGTATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTT 19131 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||| || || || |||||||| || || | ||||||||||| || ||||| || Sbjct 19130 CAACCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCATTTT 19076 Score = 116 bits (128), Expect = 2e-21 Identities = 174/244 (71%), Gaps = 16/244 (7%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| || || | |||||||| | || || || ||||| || || Sbjct 20227 AATCTGCATTCCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTT 20168 Query 33193 GTAATCAGACAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTT 33248 ||| ||||| | | ||| ||| || | || ||||| || |||||||||| Sbjct 20167 GTAGTCAGAAA----GGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTT 20112 Query 33249 GCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCG 33305 ||||||||| |||||||||||||| || | | | |||| | || ||| || | Sbjct 20111 GCTGGTCCGGAGGTATGCCTTCTTTATCTTGGATTTTGGCCT---TGACATTTTCGATGG 20055 Query 33306 TGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTT 33365 |||| |||| | || ||||| || |||||||| || || | ||||||||||||||||| Sbjct 20054 TGTCACTGGGCTCTACTTCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTT 19995 Query 33366 GCAT 33369 |||| Sbjct 19994 GCAT 19991 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| || | |||||||| | || || |||||||| || |||||||| ||| Sbjct 19989 CCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGAC 19930 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | ||| || | ||| || || || || | |||||||||||||| || Sbjct 19929 AATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGG 19870 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || || ||||| || | | | ||| || || ||| || ||||| |||| | | Sbjct 19869 ATACCCTCTTTATCTTGGATTTTGGCC---TTGACGTTTTCGATGGTGTCACTGGGCTCA 19813 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| || || | |||||| |||||||||||||| Sbjct 19812 ACTTCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 >seq27679 Length=10833 Score = 109 bits (120), Expect = 3e-19 Identities = 142/194 (73%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGT--TGG--TCATCCAATTGCTTTCCACTA 33235 |||| || |||||||| ||||||| |||| || || ||||||||||||||| Sbjct 2200 CTTTCTGAATATTGTAGTCAGACA----GAGTCCTGCCATCTTCCAATTGCTTTCCAGCG 2145 Query 33236 AATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACT 33295 || || |||||||||||||||| || |||||||| || || ||| ||| ||||| Sbjct 2144 AAGATCAAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGATCTTCTGCTTTACA 2085 Query 33296 GTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTT 33355 ||| ||||| || ||||| || || || || || ||||| || || | ||||| Sbjct 2084 TTTTCAATCGAATCTGAGGGTTCGACTTCGAGGGTAATAGTTTTACCAGTCAATGTTTTC 2025 Query 33356 ACGAAAATTTGCAT 33369 |||||||| ||||| Sbjct 2024 ACGAAAATCTGCAT 2011 >seq2470 Length=523 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | |||||| | |||| ||| | || || || ||||| ||||| || || Sbjct 6 ACCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCT 65 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || |||||||| || || || ||||| | ||| ||||||| || Sbjct 66 CAATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGG 125 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| ||| || ||| |||||||||| |||| || Sbjct 126 GATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCAC 185 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || |||||||| || || |||||||||||||||||||| Sbjct 186 TTCCAATGTAATAGTTTTTCCGGTGAGCGTTTTTACGAAAATTTGCAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318517853735586